RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CNTNAP2Q9UHC6 1331 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 TRIM49BA6NDI0 452 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 ZNF233A6NK53 670 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 C2CD2LO14523 706 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 OGTO15294 1046 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 SLC16A3O15427 465 aaKnown RBP8.04□□□□□ -1.12
CD44-228ENST00000528455 EXTL3O43909 919 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 TSPAN1O60635 241 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 ZNF623O75123 536 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 ADRB2P07550 413 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 MCF2P10911 925 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 ZSCAN20P17040 1043 aaPredicted RBP8.04□□□□□ -1.12
CD44-228ENST00000528455 RFC2P35250 354 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 MRE11P49959 708 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 PPP2R3AQ06190 1150 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 PPIGQ13427 754 aaKnown RBP eCLIP8.04□□□□□ -1.12
CD44-228ENST00000528455 GRIN2CQ14957 1233 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 SURF1Q15526 300 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 TCP11X2Q5H9J9 407 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 C9orf50Q5SZB4 431 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 ARMCX5Q6P1M9 558 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 NOTUMQ6P988 496 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 SLC27A1Q6PCB7 646 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 MPZL3Q6UWV2 235 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 ATCAYQ86WG3 371 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 GLYCTKQ8IVS8 523 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 GPD1LQ8N335 351 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 RNF214Q8ND24 703 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 ANKRD20A12PQ8NF67 263 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 TMEM40Q8WWA1 233 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 BORCS6Q96GS4 357 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 ZBTB45Q96K62 511 aaPredicted RBP8.04□□□□□ -1.12
CD44-228ENST00000528455 RNPC3Q96LT9 517 aaKnown RBP8.04□□□□□ -1.12
CD44-228ENST00000528455 MFSD14AQ96MC6 490 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 TSPAN18Q96SJ8 248 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 ADPGKQ9BRR6 497 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 NOC4LQ9BVI4 516 aaKnown RBP8.04□□□□□ -1.12
CD44-228ENST00000528455 FTHL17Q9BXU8 183 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 AGPAT5Q9NUQ2 364 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 HSPBP1Q9NZL4 362 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 MAGEC2Q9UBF1 373 aaPredicted RBP8.04□□□□□ -1.12
CD44-228ENST00000528455 LIMA1Q9UHB6 759 aaKnown RBP8.04□□□□□ -1.12
CD44-228ENST00000528455 PADI3Q9ULW8 664 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 USP20Q9Y2K6 914 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 ZMYM2Q9UBW7 1377 aa8.04□□□□□ -1.12
CD44-228ENST00000528455 ABLIM1O14639 778 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 B4GALT5O43286 388 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 EXOC3O60645 756 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 AKAP3O75969 853 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 EDN1P05305 212 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 CLTAP09496 248 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 EPB41P11171 864 aaKnown RBP8.03□□□□□ -1.12
CD44-228ENST00000528455 MX2P20592 715 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 EPHB4P54760 987 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 FAM189BP81408 668 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 SMAD3P84022 425 aaKnown RBP8.03□□□□□ -1.12
CD44-228ENST00000528455 LPIN1Q14693 890 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 GPNMBQ14956 572 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 NR1I3Q14994 352 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 DCAF4L1Q3SXM0 396 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 FAM109BQ6ICB4 259 aaPredicted RBP8.03□□□□□ -1.12
CD44-228ENST00000528455 SARM1Q6SZW1 724 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 CRELD2Q6UXH1 353 aaPredicted RBP8.03□□□□□ -1.12
CD44-228ENST00000528455 LRRC55Q6ZSA7 311 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 INTS8Q75QN2 995 aaKnown RBP8.03□□□□□ -1.12
CD44-228ENST00000528455 Q7L0L9 218 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 LRRC8DQ7L1W4 858 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 MRPL10Q7Z7H8 261 aaKnown RBP8.03□□□□□ -1.12
CD44-228ENST00000528455 USP37Q86T82 979 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 FAM228AQ86W67 206 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 CD302Q8IX05 232 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 RPUSD2Q8IZ73 545 aaKnown RBP8.03□□□□□ -1.12
CD44-228ENST00000528455 APBB2Q92870 758 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 CBWD1Q9BRT8 395 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 MSTO1Q9BUK6 570 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 HAPLN2Q9GZV7 340 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 IKZF4Q9H2S9 585 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 HIPK3Q9H422 1215 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 PCIF1Q9H4Z3 704 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 AGO3Q9H9G7 860 aaKnown RBP8.03□□□□□ -1.12
CD44-228ENST00000528455 GRPEL1Q9HAV7 217 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 ERVK-5Q9HDB9 667 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 ARMCX3Q9UH62 379 aaPredicted RBP8.03□□□□□ -1.12
CD44-228ENST00000528455 COL6A3P12111 3177 aa8.03□□□□□ -1.12
CD44-228ENST00000528455 A0A0U1RQF3 1178 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.02□□□□□ -1.13
CD44-228ENST00000528455 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.02□□□□□ -1.13
CD44-228ENST00000528455 KCNJ18B7U540 433 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 TISP43B9A030 160 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 PMM2O15305 246 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 FAM189A1O60320 539 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 STX10O60499 249 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 EOMESO95936 686 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 CXCL10P02778 98 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 TPM2P07951 284 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 CTSHP09668 335 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 KRT13P13646 458 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 CSF2RAP15509 400 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 FGFR4P22455 802 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 CD52P31358 61 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms