RNA–Protein interactions for RNA: ENST00000520561.1

CSMD1-208, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 4

Gene CSMD1, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-208ENST00000520561 SHC3Q92529 594 aa9.6□□□□□ -0.87
CSMD1-208ENST00000520561 DPF3Q92784 378 aa9.6□□□□□ -0.87
CSMD1-208ENST00000520561 KAT5Q92993 513 aa9.6□□□□□ -0.87
CSMD1-208ENST00000520561 ELMO3Q96BJ8 720 aa9.6□□□□□ -0.87
CSMD1-208ENST00000520561 KREMEN1Q96MU8 473 aa9.6□□□□□ -0.87
CSMD1-208ENST00000520561 MTIF3Q9H2K0 278 aaKnown RBP9.6□□□□□ -0.87
CSMD1-208ENST00000520561 DEF6Q9H4E7 631 aa9.6□□□□□ -0.87
CSMD1-208ENST00000520561 FAM124BQ9H5Z6 455 aaPredicted RBP9.6□□□□□ -0.87
CSMD1-208ENST00000520561 CYP3A43Q9HB55 503 aa9.6□□□□□ -0.87
CSMD1-208ENST00000520561 TBC1D13Q9NVG8 400 aa9.6□□□□□ -0.87
CSMD1-208ENST00000520561 MIOSQ9NXC5 875 aa9.6□□□□□ -0.87
CSMD1-208ENST00000520561 ZMYND8Q9ULU4 1186 aaPredicted RBP9.6□□□□□ -0.87
CSMD1-208ENST00000520561 POLIQ9UNA4 740 aa9.6□□□□□ -0.87
CSMD1-208ENST00000520561 PCDHB4Q9Y5E5 795 aa9.6□□□□□ -0.87
CSMD1-208ENST00000520561 TDRD15B5MCY1 1934 aaKnown RBP9.6□□□□□ -0.87
CSMD1-208ENST00000520561 TET1Q8NFU7 2136 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 ARHGEF37A1IGU5 675 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 TBKBP1A7MCY6 615 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 PPEF2O14830 753 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 GFPT2O94808 682 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 UPP2O95045 317 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 FGBP02675 491 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 SERPING1P05155 500 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 PNMA6AP0CW24 399 aaPredicted RBP9.59□□□□□ -0.87
CSMD1-208ENST00000520561 CD58P19256 250 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 FECHP22830 423 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 HNRNPH3P31942 346 aaKnown RBP9.59□□□□□ -0.87
CSMD1-208ENST00000520561 PDE6CP51160 858 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 CLCNKBP51801 687 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 AFF1P51825 1210 aaKnown RBP9.59□□□□□ -0.87
CSMD1-208ENST00000520561 ARID5AQ03989 594 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 KLHL30Q0D2K2 578 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 NAB2Q15742 525 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 MEA1Q16626 185 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 VPS36Q86VN1 386 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 TMTC1Q8IUR5 882 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 GPIHBP1Q8IV16 184 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 TMEM130Q8N3G9 435 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 TTC39CQ8N584 583 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 VWCEQ96DN2 955 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 CASD1Q96PB1 797 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 MMS19Q96T76 1030 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 ARID3AQ99856 593 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 BCO2Q9BYV7 579 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 GPR88Q9GZN0 384 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 DNAI2Q9GZS0 605 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 KCNF1Q9H3M0 494 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 SMYD3Q9H7B4 428 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 AIPL1Q9NZN9 384 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 SNX9Q9Y5X1 595 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 NR2E3Q9Y5X4 410 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 BZW2Q9Y6E2 419 aaKnown RBP9.59□□□□□ -0.87
CSMD1-208ENST00000520561 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.59□□□□□ -0.87
CSMD1-208ENST00000520561 TRIP11Q15643 1979 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 BRCA2P51587 3418 aa9.59□□□□□ -0.87
CSMD1-208ENST00000520561 TTC3P53804 2025 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 KPNA7A9QM74 516 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 FOXN3O00409 490 aaPredicted RBP9.58□□□□□ -0.88
CSMD1-208ENST00000520561 ARHGAP6O43182 974 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 HUS1O60921 280 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 DGKIO75912 1065 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 B3GAT3O94766 335 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 IPO7O95373 1038 aaKnown RBP9.58□□□□□ -0.88
CSMD1-208ENST00000520561 SKILP12757 684 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 CYLC1P35663 651 aaPredicted RBP9.58□□□□□ -0.88
CSMD1-208ENST00000520561 PRKCIP41743 596 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 RAP1GAPP47736 663 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 OR1G1P47890 313 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 GATMP50440 423 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 BPIFB4P59827 614 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 DEFB103AP81534 67 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 CCZ1BP86790 482 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 CCZ1P86791 482 aaPredicted RBP9.58□□□□□ -0.88
CSMD1-208ENST00000520561 CDK17Q00537 523 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 DSC1Q08554 894 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 UPP1Q16831 310 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 PAN2Q504Q3 1202 aaKnown RBP9.58□□□□□ -0.88
CSMD1-208ENST00000520561 E4F1Q66K89 784 aaPredicted RBP9.58□□□□□ -0.88
CSMD1-208ENST00000520561 SCARA3Q6AZY7 606 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 TMEM270Q6UE05 265 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 DSTYKQ6XUX3 929 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 ZNF365Q70YC5 407 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 OTOP2Q7RTS6 562 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 FAM71AQ8IYT1 594 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 RBBP8NLQ8NC74 664 aaPredicted RBP9.58□□□□□ -0.88
CSMD1-208ENST00000520561 TOP1MTQ969P6 601 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 ZNF830Q96NB3 372 aaPredicted RBP9.58□□□□□ -0.88
CSMD1-208ENST00000520561 TMEM175Q9BSA9 504 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 CISHQ9NSE2 258 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 GDAP2Q9NXN4 497 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 CACNG4Q9UBN1 327 aa9.58□□□□□ -0.88
CSMD1-208ENST00000520561 SSU72P8A0A1W2PR75 194 aa9.57□□□□□ -0.88
CSMD1-208ENST00000520561 CARNS1A5YM72 827 aa9.57□□□□□ -0.88
CSMD1-208ENST00000520561 SOWAHDA6NJG2 315 aa9.57□□□□□ -0.88
CSMD1-208ENST00000520561 TMEM189-UBE2V1I3L0A0 370 aa9.57□□□□□ -0.88
CSMD1-208ENST00000520561 DDHD2O94830 711 aa9.57□□□□□ -0.88
CSMD1-208ENST00000520561 KIF4AO95239 1232 aa9.57□□□□□ -0.88
CSMD1-208ENST00000520561 WEE2P0C1S8 567 aa9.57□□□□□ -0.88
CSMD1-208ENST00000520561 ODC1P11926 461 aa9.57□□□□□ -0.88
CSMD1-208ENST00000520561 ACO1P21399 889 aaKnown RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms