RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 KLHL11Q9NVR0 708 aa4.16□□□□□ -1.74
CSMD3-209ENST00000519485 GPRC5DQ9NZD1 345 aa4.16□□□□□ -1.74
CSMD3-209ENST00000519485 FAM30AQ9NZY2 134 aa4.16□□□□□ -1.74
CSMD3-209ENST00000519485 PRKAB1Q9Y478 270 aa4.16□□□□□ -1.74
CSMD3-209ENST00000519485 SHANK2Q9UPX8 1470 aa4.16□□□□□ -1.74
CSMD3-209ENST00000519485 ABCC2Q92887 1545 aa4.16□□□□□ -1.74
CSMD3-209ENST00000519485 GPRASP1Q5JY77 1395 aa4.15□□□□□ -1.74
CSMD3-209ENST00000519485 ARHGEF17Q96PE2 2063 aaPredicted RBP4.15□□□□□ -1.74
CSMD3-209ENST00000519485 PTPRGP23470 1445 aa4.15□□□□□ -1.74
CSMD3-209ENST00000519485 ANKRD50Q9ULJ7 1429 aa4.15□□□□□ -1.74
CSMD3-209ENST00000519485 IPO8O15397 1037 aaKnown RBP4.15□□□□□ -1.75
CSMD3-209ENST00000519485 KCNAB3O43448 404 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 MBD3O95983 291 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 CDK11BP21127 795 aaKnown RBP4.15□□□□□ -1.75
CSMD3-209ENST00000519485 ABCG1P45844 678 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 ZNF81P51508 661 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 CHN2P52757 468 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 CLRN1P58418 232 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 CCT2P78371 535 aaKnown RBP4.15□□□□□ -1.75
CSMD3-209ENST00000519485 OCA2Q04671 838 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 DMTNQ08495 405 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 FAPQ12884 760 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 STAT4Q14765 748 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 FSCN1Q16658 493 aaKnown RBP4.15□□□□□ -1.75
CSMD3-209ENST00000519485 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.15□□□□□ -1.75
CSMD3-209ENST00000519485 FAM47AQ5JRC9 791 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 KIAA1614Q5VZ46 1190 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 CASC1Q6TDU7 716 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 PTF1AQ7RTS3 328 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 ARHGEF25Q86VW2 580 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 WDR63Q8IWG1 891 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 WDR66Q8TBY9 1149 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 TGFBRAP1Q8WUH2 860 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 ZNF778Q96MU6 729 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 ALOXE3Q9BYJ1 711 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 SLC29A3Q9BZD2 475 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 TBCCD1Q9NVR7 557 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 ARPP21Q9UBL0 812 aaPredicted RBP4.15□□□□□ -1.75
CSMD3-209ENST00000519485 ZNF70Q9UC06 446 aaPredicted RBP4.15□□□□□ -1.75
CSMD3-209ENST00000519485 CFDP1Q9UEE9 299 aaPredicted RBP4.15□□□□□ -1.75
CSMD3-209ENST00000519485 DDX19BQ9UMR2 479 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 NOX1Q9Y5S8 564 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 CDY2AQ9Y6F7 541 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 PZPP20742 1482 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 ZNF521Q96K83 1311 aa4.15□□□□□ -1.75
CSMD3-209ENST00000519485 NUP155O75694 1391 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 REREQ9P2R6 1566 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 ERBINQ96RT1 1412 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 YEATS2Q9ULM3 1422 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 FANCD2Q9BXW9 1451 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 UQCRHLA0A096LP55 91 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 WIPF3A6NGB9 483 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 IGSF3O75054 1194 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 PTMAP06454 111 aaKnown RBP4.14□□□□□ -1.75
CSMD3-209ENST00000519485 UQCRHP07919 91 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 ENPP1P22413 925 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 KRTAP10-7P60409 375 aaPredicted RBP4.14□□□□□ -1.75
CSMD3-209ENST00000519485 MRPS35P82673 323 aaKnown RBP4.14□□□□□ -1.75
CSMD3-209ENST00000519485 HDAC1Q13547 482 aaPredicted RBP4.14□□□□□ -1.75
CSMD3-209ENST00000519485 DNTTIP2Q5QJE6 756 aaKnown RBP4.14□□□□□ -1.75
CSMD3-209ENST00000519485 MFSD14BQ5SR56 506 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 ATXN7L2Q5T6C5 722 aaPredicted RBP4.14□□□□□ -1.75
CSMD3-209ENST00000519485 ZNF425Q6IV72 752 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 ABHD15Q6UXT9 468 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 AFAP1L2Q8N4X5 818 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 ZNF366Q8N895 744 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 AHCYL2Q96HN2 611 aaKnown RBP4.14□□□□□ -1.75
CSMD3-209ENST00000519485 RAX2Q96IS3 184 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 CFAP53Q96M91 514 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 TIMP4Q99727 224 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 QRSL1Q9H0R6 528 aaKnown RBP4.14□□□□□ -1.75
CSMD3-209ENST00000519485 KLK15Q9H2R5 256 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 PANK3Q9H999 370 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 GALNT9Q9HCQ5 603 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 LRIT1Q9P2V4 623 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 DPP7Q9UHL4 492 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 ZBTB21Q9ULJ3 1066 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 KIF3AQ9Y496 699 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 DDX49Q9Y6V7 483 aaKnown RBP4.14□□□□□ -1.75
CSMD3-209ENST00000519485 USP19O94966 1318 aa4.14□□□□□ -1.75
CSMD3-209ENST00000519485 EIF4G3O43432 1585 aaKnown RBP4.14□□□□□ -1.75
CSMD3-209ENST00000519485 ARHGAP31Q2M1Z3 1444 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 LRRIQ1Q96JM4 1722 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 TOPBP1Q92547 1522 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 IKBKBO14920 756 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 SNRPA1P09661 255 aaKnown RBP4.13□□□□□ -1.75
CSMD3-209ENST00000519485 MTHFD2P13995 350 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 WT1P19544 449 aaPredicted RBP4.13□□□□□ -1.75
CSMD3-209ENST00000519485 CTSSP25774 331 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 PPP2R1AP30153 589 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 MCM2P49736 904 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 PROK1P58294 105 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 CXADRP78310 365 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 SRSF4Q08170 494 aaKnown RBP4.13□□□□□ -1.75
CSMD3-209ENST00000519485 SYCP1Q15431 976 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 PRAMEF14Q5SWL7 426 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 CC2D1BQ5T0F9 858 aaKnown RBP4.13□□□□□ -1.75
CSMD3-209ENST00000519485 EGFLAMQ63HQ2 1017 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 FAM180AQ6UWF9 173 aa4.13□□□□□ -1.75
CSMD3-209ENST00000519485 ZNF788Q6ZQV5 615 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms