RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 TMEM237Q96Q45 408 aa11.83□□□□□ -0.52
TCOF1-211ENST00000513346 DUSP9Q99956 384 aaKnown RBP11.83□□□□□ -0.52
TCOF1-211ENST00000513346 KLC2Q9H0B6 622 aa11.83□□□□□ -0.52
TCOF1-211ENST00000513346 METTL5Q9NRN9 209 aaKnown RBP11.83□□□□□ -0.52
TCOF1-211ENST00000513346 DNM1LO00429 736 aa11.83□□□□□ -0.52
TCOF1-211ENST00000513346 MAN1A2O60476 641 aa11.83□□□□□ -0.52
TCOF1-211ENST00000513346 FKBP6O75344 327 aa11.83□□□□□ -0.52
TCOF1-211ENST00000513346 UNC5CO95185 931 aa11.83□□□□□ -0.52
TCOF1-211ENST00000513346 NFX1Q12986 1120 aaKnown RBP11.83□□□□□ -0.52
TCOF1-211ENST00000513346 PRAMEF18Q5VWM3 479 aa11.83□□□□□ -0.52
TCOF1-211ENST00000513346 PRPF39Q86UA1 669 aaKnown RBP11.83□□□□□ -0.52
TCOF1-211ENST00000513346 ZNF483Q8TF39 744 aaPredicted RBP11.83□□□□□ -0.52
TCOF1-211ENST00000513346 MSTO1Q9BUK6 570 aa11.83□□□□□ -0.52
TCOF1-211ENST00000513346 MGRN1O60291 552 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 CLPTM1O96005 669 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 RASA1P20936 1047 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 STX3Q13277 289 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 COL9A3Q14050 684 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-211ENST00000513346 CWF19L1Q69YN2 538 aaKnown RBP11.82□□□□□ -0.52
TCOF1-211ENST00000513346 SLFN12LQ6IEE8 588 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 ZNF513Q8N8E2 541 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-211ENST00000513346 EIF2AQ9BY44 585 aaKnown RBP11.82□□□□□ -0.52
TCOF1-211ENST00000513346 TRIM15Q9C019 465 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 LRFN2Q9ULH4 789 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 DTNAQ9Y4J8 743 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 PCDHGC5Q9Y5F6 944 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 ZBBXA8MT70 800 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 STAT3P40763 770 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 SURF1Q15526 300 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 TBCCQ15814 346 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 TRMT5Q32P41 509 aaKnown RBP11.82□□□□□ -0.52
TCOF1-211ENST00000513346 PADI6Q6TGC4 694 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 MPP4Q96JB8 637 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 FAM167AQ96KS9 214 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 OSBPL7Q9BZF2 842 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 MYLK2Q9H1R3 596 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 ZWILCHQ9H900 591 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 EMSYQ7Z589 1322 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 A6NJR5 290 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 KPNA7A9QM74 516 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 BLMHQ13867 455 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 WLSQ5T9L3 541 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 CATSPER4Q7RTX7 472 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 ZNF571Q7Z3V5 609 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-211ENST00000513346 METTL23Q86XA0 190 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 THNSL1Q8IYQ7 743 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 RPF1Q9H9Y2 349 aaKnown RBP11.82□□□□□ -0.52
TCOF1-211ENST00000513346 DMAP1Q9NPF5 467 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-211ENST00000513346 ADA2Q9NZK5 511 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 MARCOQ9UEW3 520 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-211ENST00000513346 NPHP3-ACAD11A0A0J9YXS1 232 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 CD58P19256 250 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 PTDSS1P48651 473 aaKnown RBP11.82□□□□□ -0.52
TCOF1-211ENST00000513346 CNGA2Q16280 664 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 CMTM5Q96DZ9 223 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 ZNF184Q99676 751 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-211ENST00000513346 BTBD10Q9BSF8 475 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 ACAD9Q9H845 621 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 SEPT10Q9P0V9 454 aa11.82□□□□□ -0.52
TCOF1-211ENST00000513346 A8MXQ7 604 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 KRT4P19013 534 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 FGFR2P21802 821 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 HMGCS2P54868 508 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 NCALDP61601 193 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 CENPCQ03188 943 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 TROAPQ12815 778 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 AGBL3Q8NEM8 1001 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 USP6NLQ92738 828 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 KLF6Q99612 283 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-211ENST00000513346 THAP2Q9H0W7 228 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 ZNF212Q9UDV6 495 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 IP6K2Q9UHH9 426 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 RSPH10B2B2RC85 870 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 RSPH10BP0C881 870 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 PSMA2P25787 234 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 TMEM259Q4ZIN3 620 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 SPOPLQ6IQ16 392 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 EME1Q96AY2 570 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 ING2Q9H160 280 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 NAALADL1Q9UQQ1 740 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 COL5A2P05997 1499 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-211ENST00000513346 CYP26A1O43174 497 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 KRT16P08779 473 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 GCLCP48506 637 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-211ENST00000513346 LDHDQ86WU2 507 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 DDHD1Q8NEL9 900 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 RBM46Q8TBY0 533 aaKnown RBP11.81□□□□□ -0.52
TCOF1-211ENST00000513346 PALMDQ9NP74 551 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 SAR1AQ9NR31 198 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 BTBD7Q9P203 1132 aa11.81□□□□□ -0.52
TCOF1-211ENST00000513346 QARSP47897 775 aaKnown RBP11.8□□□□□ -0.52
TCOF1-211ENST00000513346 HSPA13P48723 471 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 SERPINB8P50452 374 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 ZNF543Q08ER8 600 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 TFDP2Q14188 446 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 HHIPL2Q6UWX4 724 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 CKAP2Q8WWK9 683 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 ASCC2Q9H1I8 757 aaPredicted RBP11.8□□□□□ -0.52
TCOF1-211ENST00000513346 RNF225M0QZC1 329 aaPredicted RBP11.8□□□□□ -0.52
TCOF1-211ENST00000513346 ENTPD3O75355 529 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms