RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TIGD5Q53EQ6 642 aa31.87■■■□□ 2.69
LIMCH1-211ENST00000509638 DDX53Q86TM3 631 aaKnown RBP31.87■■■□□ 2.69
LIMCH1-211ENST00000509638 RNF214Q8ND24 703 aa31.87■■■□□ 2.69
LIMCH1-211ENST00000509638 FBXL13Q8NEE6 735 aa31.87■■■□□ 2.69
LIMCH1-211ENST00000509638 ANKRD20A12PQ8NF67 263 aa31.87■■■□□ 2.69
LIMCH1-211ENST00000509638 TRAPPC3O43617 180 aa31.86■■■□□ 2.69
LIMCH1-211ENST00000509638 CDK11BP21127 795 aaKnown RBP31.86■■■□□ 2.69
LIMCH1-211ENST00000509638 TPM4P67936 248 aa31.86■■■□□ 2.69
LIMCH1-211ENST00000509638 ELAVL2Q12926 359 aaKnown RBP31.86■■■□□ 2.69
LIMCH1-211ENST00000509638 ZNF699Q32M78 642 aa31.86■■■□□ 2.69
LIMCH1-211ENST00000509638 MIIPQ5JXC2 388 aa31.86■■■□□ 2.69
LIMCH1-211ENST00000509638 RNF168Q8IYW5 571 aaPredicted RBP31.86■■■□□ 2.69
LIMCH1-211ENST00000509638 SPPL3Q8TCT6 385 aa31.86■■■□□ 2.69
LIMCH1-211ENST00000509638 POF1BQ8WVV4 589 aa31.86■■■□□ 2.69
LIMCH1-211ENST00000509638 XYLT2Q9H1B5 865 aa31.86■■■□□ 2.69
LIMCH1-211ENST00000509638 LZTS1Q9Y250 596 aa31.86■■■□□ 2.69
LIMCH1-211ENST00000509638 RFXAPO00287 272 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 DNAJB1P25685 340 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 UBE3AQ05086 875 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 SUSD3Q96L08 255 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 B3GALT6Q96L58 329 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 ANP32EQ9BTT0 268 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 PUF60Q9UHX1 559 aaKnown RBP31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 KPNA7A9QM74 516 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 PES1O00541 588 aaKnown RBP31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 SOD2P04179 222 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 VWA3BQ502W6 1294 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 FAM171A1Q5VUB5 890 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 VPS52Q8N1B4 723 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 SEMA4DQ92854 862 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 FAM161BQ96MY7 647 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 HERC2P3Q9BVR0 1158 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 IMPG2Q9BZV3 1241 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 NDST4Q9H3R1 872 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 PRDM12Q9H4Q4 367 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 UTP3Q9NQZ2 479 aaKnown RBP eCLIP31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 STK39Q9UEW8 545 aa31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 LIMA1Q9UHB6 759 aaKnown RBP31.85■■■□□ 2.69
LIMCH1-211ENST00000509638 ATICP31939 592 aa31.84■■■□□ 2.69
LIMCH1-211ENST00000509638 DSTYKQ6XUX3 929 aa31.84■■■□□ 2.69
LIMCH1-211ENST00000509638 TAS1R1Q7RTX1 841 aa31.84■■■□□ 2.69
LIMCH1-211ENST00000509638 ELMO3Q96BJ8 720 aa31.84■■■□□ 2.69
LIMCH1-211ENST00000509638 PI4K2AQ9BTU6 479 aa31.84■■■□□ 2.69
LIMCH1-211ENST00000509638 COQ4Q9Y3A0 265 aa31.84■■■□□ 2.69
LIMCH1-211ENST00000509638 MYO7AQ13402 2215 aa31.83■■■□□ 2.69
LIMCH1-211ENST00000509638 ASS1P00966 412 aaKnown RBP31.83■■■□□ 2.69
LIMCH1-211ENST00000509638 PAX3P23760 479 aa31.83■■■□□ 2.69
LIMCH1-211ENST00000509638 TKTP29401 623 aaKnown RBP31.83■■■□□ 2.69
LIMCH1-211ENST00000509638 GRIN2CQ14957 1233 aa31.83■■■□□ 2.69
LIMCH1-211ENST00000509638 GPR153Q6NV75 609 aa31.83■■■□□ 2.69
LIMCH1-211ENST00000509638 SENP8Q96LD8 212 aa31.83■■■□□ 2.69
LIMCH1-211ENST00000509638 ZBP1Q9H171 429 aa31.83■■■□□ 2.69
LIMCH1-211ENST00000509638 VPS16Q9H269 839 aa31.83■■■□□ 2.69
LIMCH1-211ENST00000509638 TLR9Q9NR96 1032 aa31.83■■■□□ 2.69
LIMCH1-211ENST00000509638 RAB20Q9NX57 234 aa31.83■■■□□ 2.69
LIMCH1-211ENST00000509638 M0QZQ0 153 aa31.82■■■□□ 2.68
LIMCH1-211ENST00000509638 PMM2O15305 246 aa31.82■■■□□ 2.68
LIMCH1-211ENST00000509638 P4HA2O15460 535 aa31.82■■■□□ 2.68
LIMCH1-211ENST00000509638 LRRN2O75325 713 aa31.82■■■□□ 2.68
LIMCH1-211ENST00000509638 STAU1O95793 577 aaKnown RBP31.82■■■□□ 2.68
LIMCH1-211ENST00000509638 TPM2P07951 284 aa31.82■■■□□ 2.68
LIMCH1-211ENST00000509638 FXR1P51114 621 aaKnown RBP eCLIP31.82■■■□□ 2.68
LIMCH1-211ENST00000509638 CETN1Q12798 172 aa31.82■■■□□ 2.68
LIMCH1-211ENST00000509638 PDZRN4Q6ZMN7 1036 aaPredicted RBP31.82■■■□□ 2.68
LIMCH1-211ENST00000509638 VRTNQ9H8Y1 702 aa31.82■■■□□ 2.68
LIMCH1-211ENST00000509638 SNX9Q9Y5X1 595 aa31.82■■■□□ 2.68
LIMCH1-211ENST00000509638 REV3LO60673 3130 aa31.82■■■□□ 2.68
LIMCH1-211ENST00000509638 LPXNO60711 386 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 ODC1P11926 461 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 COPB1P53618 953 aaKnown RBP31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 NOP14P78316 857 aaKnown RBP31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 SGSM1Q2NKQ1 1148 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 USP41Q3LFD5 358 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 WDR72Q3MJ13 1102 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 RTP2Q5QGT7 225 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 SPOPLQ6IQ16 392 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 APTXQ7Z2E3 356 aaKnown RBP31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 CEP57Q86XR8 500 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 TCF25Q9BQ70 676 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 ENTPD7Q9NQZ7 604 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 GDAP2Q9NXN4 497 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 GCNT4Q9P109 453 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 PCDHB8Q9UN66 801 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 URODP06132 367 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 FGFR3P22607 806 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 GLUD2P49448 558 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 CAMK1Q14012 370 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 CCDC150Q8NCX0 1101 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 TAF4BQ92750 862 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 TTPALQ9BTX7 342 aa31.81■■■□□ 2.68
LIMCH1-211ENST00000509638 CYB561D2O14569 222 aa31.8■■■□□ 2.68
LIMCH1-211ENST00000509638 SYN3O14994 580 aa31.8■■■□□ 2.68
LIMCH1-211ENST00000509638 ERVFC1P60507 584 aa31.8■■■□□ 2.68
LIMCH1-211ENST00000509638 TNNC1P63316 161 aa31.8■■■□□ 2.68
LIMCH1-211ENST00000509638 ZNF667Q5HYK9 610 aa31.8■■■□□ 2.68
LIMCH1-211ENST00000509638 KIAA1841Q6NSI8 718 aa31.8■■■□□ 2.68
LIMCH1-211ENST00000509638 Q7L0L9 218 aa31.8■■■□□ 2.68
LIMCH1-211ENST00000509638 LMAN2LQ9H0V9 348 aa31.8■■■□□ 2.68
LIMCH1-211ENST00000509638 CHST7Q9NS84 486 aa31.8■■■□□ 2.68
LIMCH1-211ENST00000509638 NXF1Q9UBU9 619 aaKnown RBP31.8■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms