RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 SIX4Q9UIU6 781 aa12.85□□□□□ -0.35
PDLIM5-208ENST00000504489 PTPRDP23468 1912 aa12.85□□□□□ -0.35
PDLIM5-208ENST00000504489 PPEF2O14830 753 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 C4BPAP04003 597 aaKnown RBP12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 ITGB3P05106 788 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 CTSAP10619 480 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 POLR2BP30876 1174 aaKnown RBP12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 GTF2H1P32780 548 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 PNPLA4P41247 253 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 MARSP56192 900 aaKnown RBP12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 LILRA4P59901 499 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 RBP5P82980 135 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 USP41Q3LFD5 358 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 C15orf39Q6ZRI6 1047 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 TAS1R1Q7RTX1 841 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 TMC7Q7Z402 723 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 LRRC52Q8N7C0 313 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 FAM84AQ96KN4 292 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 SUSD3Q96L08 255 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 FUCA2Q9BTY2 467 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 AGAP1Q9UPQ3 857 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 SSX2IPQ9Y2D8 614 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 NUB1Q9Y5A7 615 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 IRAK3Q9Y616 596 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 MTCH2Q9Y6C9 303 aa12.84□□□□□ -0.35
PDLIM5-208ENST00000504489 DOCK6Q96HP0 2047 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 M0QZQ0 153 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 STX10O60499 249 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 CXCL14O95715 111 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 CCDC192P0DO97 292 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 FGFR3P22607 806 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 IGFBP4P22692 258 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 IRS1P35568 1242 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 BRCC3P46736 316 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 GLUD2P49448 558 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 TAF6P49848 677 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 DSG1Q02413 1049 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 PPP3CAQ08209 521 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 SMC1AQ14683 1233 aaKnown RBP12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 TPD52L1Q16890 204 aaPredicted RBP12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 ZACNQ401N2 412 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 CCDC40Q4G0X9 1142 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 TIGD5Q53EQ6 642 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 FAM171A1Q5VUB5 890 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 KIAA0319Q5VV43 1072 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 C11orf57Q6ZUT1 292 aaPredicted RBP12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 SV2AQ7L0J3 742 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 IRF2BP1Q8IU81 584 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 MRPL43Q8N983 215 aaKnown RBP12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 ENOX1Q8TC92 643 aaKnown RBP12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 MICAL1Q8TDZ2 1067 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 ZNF560Q96MR9 790 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 TCF25Q9BQ70 676 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 THAP9Q9H5L6 903 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 ENTPD7Q9NQZ7 604 aa12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 R3HCC1Q9Y3T6 440 aaKnown RBP12.83□□□□□ -0.36
PDLIM5-208ENST00000504489 C2orf16Q68DN1 1984 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 ARHGEF37A1IGU5 675 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 SYCE3A1L190 88 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 KPNA7A9QM74 516 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 I3L4J1 428 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 SYN3O14994 580 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 SPTLC1O15269 473 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 LILRB3O75022 631 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 PHACTR2O75167 634 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 CST3P01034 146 aaPredicted RBP12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 URODP06132 367 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 KRT19P08727 400 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 TRIM49P0CI25 452 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 TRIM49CP0CI26 452 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 ZSCAN23Q3MJ62 389 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 SV2CQ496J9 727 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 TDRD10Q5VZ19 366 aaKnown RBP12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 SCARA3Q6AZY7 606 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 KIAA1841Q6NSI8 718 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 PDXDC1Q6P996 788 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 PIK3R5Q8WYR1 880 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 SENP8Q96LD8 212 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 TTPALQ9BTX7 342 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 NAT10Q9H0A0 1025 aaKnown RBP12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 DNAJC25Q9H1X3 360 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 NSUN3Q9H649 340 aaKnown RBP12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 TMEM8AQ9HCN3 771 aa12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 MRPL17Q9NRX2 175 aaKnown RBP12.82□□□□□ -0.36
PDLIM5-208ENST00000504489 C2orf71A6NGG8 1288 aa12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 VNN1O95497 513 aa12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 STAU1O95793 577 aaKnown RBP12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 FOSL2P15408 326 aa12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 TKTP29401 623 aaKnown RBP12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 ATICP31939 592 aa12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 GCLMP48507 274 aa12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 MYO1EQ12965 1108 aa12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 BIRC3Q13489 604 aa12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 TRPC3Q13507 836 aa12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 PTPN14Q15678 1187 aa12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 ANO6Q4KMQ2 910 aa12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 RTP2Q5QGT7 225 aa12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 TCERG1LQ5VWI1 586 aa12.81□□□□□ -0.36
PDLIM5-208ENST00000504489 PLPP4Q5VZY2 271 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms