RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	PRPF39	Q86UA1	669 aa	Known RBP	11.21	□□□□□ -0.61
TRAPPC12-223	ENST00000497597	FBXO27	Q8NI29	283 aa		11.21	□□□□□ -0.61
TRAPPC12-223	ENST00000497597	GRK7	Q8WTQ7	553 aa		11.21	□□□□□ -0.61
TRAPPC12-223	ENST00000497597	RBM17	Q96I25	401 aa	Known RBP	11.21	□□□□□ -0.61
TRAPPC12-223	ENST00000497597	CNBD2	Q96M20	576 aa		11.21	□□□□□ -0.61
TRAPPC12-223	ENST00000497597	NMUR2	Q9GZQ4	415 aa		11.21	□□□□□ -0.61
TRAPPC12-223	ENST00000497597	WNT8A	Q9H1J5	351 aa		11.21	□□□□□ -0.61
TRAPPC12-223	ENST00000497597	LRRC4B	Q9NT99	713 aa		11.21	□□□□□ -0.61
TRAPPC12-223	ENST00000497597	GRID1	Q9ULK0	1009 aa		11.21	□□□□□ -0.61
TRAPPC12-223	ENST00000497597	RABGAP1	Q9Y3P9	1069 aa		11.21	□□□□□ -0.61
TRAPPC12-223	ENST00000497597	PALM3	A6NDB9	673 aa	Predicted RBP	11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	USP17L10	C9JJH3	530 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	BOLA2-SMG1P6	H3BVE0	249 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ASMTL	O95671	621 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CDK8	P49336	464 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	NPEPPS	P55786	919 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CDC16	Q13042	620 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CLUL1	Q15846	466 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	SPDYC	Q5MJ68	293 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	C12orf60	Q5U649	245 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PPP4R3CP	Q6ZMV5	832 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	APLF	Q8IW19	511 aa	Predicted RBP	11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CCDC89	Q8N998	374 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	LENG1	Q96BZ8	264 aa	Predicted RBP	11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	FAM136A	Q96C01	138 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ACAP3	Q96P50	834 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	SIX2	Q9NPC8	291 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	MYH3	P11055	1940 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	MED1	Q15648	1581 aa	Predicted RBP	11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	XPO1	O14980	1071 aa	Known RBP	11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	LPXN	O60711	386 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	COQ9	O75208	318 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	SLURP2	P0DP57	97 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	HOXA13	P31271	388 aa	Predicted RBP	11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	YWHAG	P61981	247 aa	Known RBP eCLIP	11.21	□□□□□ -0.62	9e-7	■■■■□ 23.9
TRAPPC12-223	ENST00000497597	CBX3	Q13185	183 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	SLC45A4	Q5BKX6	768 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CLEC4G	Q6UXB4	293 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	DPP8	Q6V1X1	898 aa	Predicted RBP	11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	RAPH1	Q70E73	1250 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TRABD2A	Q86V40	505 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	SLC47A2	Q86VL8	602 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CATSPER3	Q86XQ3	398 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ARHGEF19	Q8IW93	802 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ENDOV	Q8N8Q3	282 aa	Known RBP	11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	SHKBP1	Q8TBC3	707 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PYROXD1	Q8WU10	500 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CPA5	Q8WXQ8	436 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	HAS1	Q92839	578 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	MIS12	Q9H081	205 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ZNF287	Q9HBT7	754 aa		11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	STX18	Q9P2W9	335 aa	Known RBP	11.21	□□□□□ -0.62
TRAPPC12-223	ENST00000497597		M0R2N6	131 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	IMPDH2	P12268	514 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CDK7	P50613	346 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ARL4C	P56559	192 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	SLC25A3	Q00325	362 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	NCOA4	Q13772	614 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PDIA5	Q14554	519 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PDK4	Q16654	411 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ARSH	Q5FYA8	562 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TCHHL1	Q5QJ38	904 aa	Predicted RBP	11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	LRRC8B	Q6P9F7	803 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	DHX38	Q92620	1227 aa	Known RBP	11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	LZTS2	Q9BRK4	669 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	MAK16	Q9BXY0	300 aa	Known RBP	11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	KLHL4	Q9C0H6	718 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	IFT122	Q9HBG6	1241 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597		H0YIN7	160 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PEX1	O43933	1283 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	DAGLB	Q8NCG7	672 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ATL2	Q8NHH9	583 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	HSPBAP1	Q96EW2	488 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TMEM109	Q9BVC6	243 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	OSBPL8	Q9BZF1	889 aa		11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ZNF395	Q9H8N7	513 aa	Predicted RBP	11.2	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PDXK	O00764	312 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TMEM119	Q4V9L6	283 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	GRAMD4	Q6IC98	578 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	RBM15B	Q8NDT2	890 aa	Known RBP	11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	RANBP17	Q9H2T7	1088 aa	Known RBP	11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	LIN28A	Q9H9Z2	209 aa	Known RBP	11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	WHRN	Q9P202	907 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ZNF212	Q9UDV6	495 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PCDHGA4	Q9Y5G9	962 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PCDHA1	Q9Y5I3	950 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	COMMD3-BMI1	R4GMX3	469 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CFLAR	O15519	480 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TOM1L1	O75674	476 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ZMPSTE24	O75844	475 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	DLG4	P78352	724 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TFDP1	Q14186	410 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	RSPH3	Q86UC2	560 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TXNRD3	Q86VQ6	643 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	RHPN2	Q8IUC4	686 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	AGR3	Q8TD06	166 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PPP2R3C	Q969Q6	453 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	C11orf70	Q9BRQ4	267 aa		11.19	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	MECR	Q9BV79	373 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms