RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 SKA1Q96BD8 255 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 ALKBH8Q96BT7 664 aaKnown RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 CCDC17Q96LX7 622 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 KREMEN1Q96MU8 473 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 PWWP2AQ96N64 755 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 NACC1Q96RE7 527 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 AMNQ9BXJ7 453 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 TRIM55Q9BYV6 548 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 PCMTD2Q9NV79 361 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 KANSL3Q9P2N6 904 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 CHORDC1Q9UHD1 332 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 NARFQ9UHQ1 456 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 ANAPC7Q9UJX3 599 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 MTO1Q9Y2Z2 717 aaKnown RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 CYP26A1O43174 497 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 MAGEC1O60732 1142 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 SHMT1P34896 483 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 MXI1P50539 228 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 SESN3P58005 492 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 DLG4P78352 724 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 MORF4L2Q15014 288 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 CLEC16AQ2KHT3 1053 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 PLEKHG4Q58EX7 1191 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 EFHC2Q5JST6 749 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 PCNX4Q63HM2 1172 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 CYP4F22Q6NT55 531 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 LVRNQ6Q4G3 990 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 OTOP1Q7RTM1 612 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 CLEC10AQ8IUN9 316 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 KSR1Q8IVT5 923 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 KATNAL2Q8IYT4 538 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 ZNF276Q8N554 614 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 SLC5A5Q92911 643 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 MCUR1Q96AQ8 359 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 HERPUD2Q9BSE4 406 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 OSBPL8Q9BZF1 889 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 NPHS2Q9NP85 383 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 SAYSD1Q9NPB0 183 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 POLIQ9UNA4 740 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 TBC1D30Q9Y2I9 924 aa10.24□□□□□ -0.77
SYNE1-230ENST00000495090 R3HDM2Q9Y2K5 976 aaKnown RBP10.24□□□□□ -0.77
SYNE1-230ENST00000495090 IGLV3-22A0A075B6J6 115 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 PLSCR1O15162 318 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 ALOX15BO15296 676 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 GRIN3BO60391 1043 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 PSMD10O75832 226 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 PENKP01210 267 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-230ENST00000495090 RALAP11233 206 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 FGFR1P11362 822 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 GSTT1P30711 240 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 CDK16Q00536 496 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 LRRC23Q53EV4 343 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-230ENST00000495090 CCDC62Q6P9F0 684 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 PRUNE1Q86TP1 453 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 VPS52Q8N1B4 723 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 LINC00116Q8NCU8 138 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 STKLD1Q8NE28 680 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 KAT5Q92993 513 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 DYDC2Q96IM9 177 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 OLFM3Q96PB7 478 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 HAPLN3Q96S86 360 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 TMEM117Q9H0C3 514 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 KRT82Q9NSB4 513 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 ARL8BQ9NVJ2 186 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 SHOC2Q9UQ13 582 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 SUGT1Q9Y2Z0 365 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 COQ4Q9Y3A0 265 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 DAGLAQ9Y4D2 1042 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 IRF6O14896 467 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 ATP2A1O14983 1001 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 PROSCO94903 275 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 LYNP07948 512 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 FDX1P10109 184 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 RARBP10826 455 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 PIM1P11309 404 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-230ENST00000495090 PLS3P13797 630 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 ATP2B4P23634 1241 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 CETN2P41208 172 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 GCLMP48507 274 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 SERPINB4P48594 390 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 VPS41P49754 854 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 GPC3P51654 580 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 PRELPP51888 382 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 MAPK6Q16659 721 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 P3H1Q32P28 736 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 MFSD14BQ5SR56 506 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 NSMFQ6X4W1 530 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 CHSY1Q86X52 802 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 TPH2Q8IWU9 490 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 RHOT1Q8IXI2 618 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 C4orf33Q8N1A6 199 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 OGFOD1Q8N543 542 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 XXYLT1Q8NBI6 393 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 EXD1Q8NHP7 514 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 CENPKQ9BS16 269 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 DHRS4Q9BTZ2 278 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 SPATA16Q9BXB7 569 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 ASCC2Q9H1I8 757 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-230ENST00000495090 TAS2R1Q9NYW7 299 aa10.23□□□□□ -0.77
SYNE1-230ENST00000495090 NYAP2Q9P242 653 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms