RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 OR6B2Q6IFH4 312 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PPP1R21Q6ZMI0 780 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 FAM47EQ6ZV65 393 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ZNF483Q8TF39 744 aaPredicted RBP11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 AENQ8WTP8 325 aaKnown RBP11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 DNAJC9Q8WXX5 260 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ANKRD36BP1Q96IX9 119 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 IQCGQ9H095 443 aaKnown RBP11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 HES2Q9Y543 173 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SUPT20HL2P0C7V6 817 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RARBP10826 455 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RPS6KA3P51812 740 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CDH8P55286 799 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SPIRE1Q08AE8 756 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PPP6R3Q5H9R7 873 aaPredicted RBP11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 C6orf118Q5T5N4 469 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TWF2Q6IBS0 349 aaKnown RBP11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 HSPH1Q92598 858 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 KDM4CQ9H3R0 1056 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 AJAP1Q9UKB5 411 aaPredicted RBP11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ZNF536O15090 1300 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CYP3A7-CYP3A51PA0A087WV96 503 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 F8VZ95 297 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PDHXO00330 501 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SART1O43290 800 aaKnown RBP11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 AHCYL1O43865 530 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CYP3A7P24462 503 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ALDH5A1P51649 535 aaPredicted RBP11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 GPC5P78333 572 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ROR2Q01974 943 aaKnown RBP11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TRADDQ15628 312 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MAP7D1Q3KQU3 841 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ATG4AQ8WYN0 398 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RNF34Q969K3 372 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ARHGEF26Q96DR7 871 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MYH6P13533 1939 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 UBR2Q8IWV8 1755 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 A0A087WZ62 844 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 DDX3XO00571 662 aaKnown RBP eCLIP11.36□□□□□ -0.597e-9■■□□□ 12.6
MSH5-SAPCD1-207ENST00000493662 TROVE2P10155 538 aaKnown RBP eCLIP11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TFDP1Q14186 410 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 C10orf76Q5T2E6 689 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TMEM63BQ5T3F8 832 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 FKBP1CQ5VVH2 108 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 DNAJC24Q6P3W2 148 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SDCCAG8Q86SQ7 713 aaPredicted RBP11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ST13P4Q8IZP2 240 aaPredicted RBP11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ARHGAP18Q8N392 663 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 AGAP11Q8TF27 550 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 BAP1Q92560 729 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 FDXACB1Q9BRP7 624 aaPredicted RBP11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 R3HDMLQ9H3Y0 253 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SETD4Q9NVD3 440 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 IKBKGQ9Y6K9 419 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TNFSF9P41273 254 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NOP14P78316 857 aaKnown RBP11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ZNF667Q5HYK9 610 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 GPRC5AQ8NFJ5 357 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 OR6J1Q8NGC5 347 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 UBA3Q8TBC4 463 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ASAP3Q8TDY4 903 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 HIC2Q96JB3 615 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PRMT1Q99873 361 aaKnown RBP11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MED10Q9BTT4 135 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PITPNM3Q9BZ71 974 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 OLFML3Q9NRN5 406 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PNMA3Q9UL41 463 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ALG6Q9Y672 507 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CACNA1SQ13698 1873 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MYH7P12883 1935 aa11.36□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 B4GALT5O43286 388 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 COMTP21964 271 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 IL9RQ01113 521 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PPP2R5EQ16537 467 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PPP1R14CQ8TAE6 165 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TEPSINQ96N21 525 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 AGAP1Q9UPQ3 857 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TRAF3IP3Q9Y228 551 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NUB1Q9Y5A7 615 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CASZ1Q86V15 1759 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 KLHL33A6NCF5 533 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PIK3CDO00329 1044 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TNPO2O14787 897 aaKnown RBP11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TLR3O15455 904 aaKnown RBP11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RAD51CO43502 376 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 STAM2O75886 525 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CXCL8P10145 99 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ARPP19P56211 112 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SP2Q02086 613 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NAB2Q15742 525 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 LRIG3Q6UXM1 1119 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 FASTKD5Q7L8L6 764 aaKnown RBP11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 KLHL23Q8NBE8 558 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 GSDMBQ8TAX9 411 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MAIP1Q8WWC4 291 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 GPRASP2Q96D09 838 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 KIF12Q96FN5 646 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MRPL4Q9BYD3 311 aaKnown RBP11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 AP5M1Q9H0R1 490 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 USP15Q9Y4E8 981 aaPredicted RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms