RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 SAP30BPQ9UHR5 308 aaKnown RBP4.19□□□□□ -1.74
CPSF3-205ENST00000489629 YY2O15391 372 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 MPPED1O15442 326 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 SUN1O94901 812 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 LMO1P25800 156 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 KRT85P78386 507 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 TLE1Q04724 770 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 DYRK1AQ13627 763 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 ZNF365Q70YC5 407 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 CLNKQ7Z7G1 428 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 RSPH3Q86UC2 560 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 COA7Q96BR5 231 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 TIMP4Q99727 224 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 CALCOCO1Q9P1Z2 691 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 ARPP21Q9UBL0 812 aaPredicted RBP4.18□□□□□ -1.74
CPSF3-205ENST00000489629 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.18□□□□□ -1.74
CPSF3-205ENST00000489629 SLC45A2Q9UMX9 530 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 ATP8A1Q9Y2Q0 1164 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 NEU2Q9Y3R4 380 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 PCDHB1Q9Y5F3 818 aa4.18□□□□□ -1.74
CPSF3-205ENST00000489629 ARHGEF17Q96PE2 2063 aaPredicted RBP4.17□□□□□ -1.74
CPSF3-205ENST00000489629 KLHL33A6NCF5 533 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 MT-CO1P00395 513 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 ELFN1P0C7U0 828 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 ANXA11P50995 505 aaKnown RBP4.17□□□□□ -1.74
CPSF3-205ENST00000489629 MAPK10P53779 464 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 SLC16A1P53985 500 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 RPS7P62081 194 aaKnown RBP4.17□□□□□ -1.74
CPSF3-205ENST00000489629 FPGSQ05932 587 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 RAB39AQ14964 217 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 PTPRRQ15256 657 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 CD300EQ496F6 205 aaPredicted RBP4.17□□□□□ -1.74
CPSF3-205ENST00000489629 SYDE2Q5VT97 1194 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 CFAP52Q8N1V2 620 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 TMIEQ8NEW7 156 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 SLC30A5Q8TAD4 765 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 LPIN2Q92539 896 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 ANKS1AQ92625 1134 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 TMEM125Q96AQ2 219 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 UROC1Q96N76 676 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 SPC25Q9HBM1 224 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 INTS13Q9NVM9 706 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 CDYLQ9Y232 598 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 ENTPD2Q9Y5L3 495 aa4.17□□□□□ -1.74
CPSF3-205ENST00000489629 COL3A1P02461 1466 aaPredicted RBP4.17□□□□□ -1.74
CPSF3-205ENST00000489629 SETD1BQ9UPS6 1966 aaKnown RBP4.16□□□□□ -1.74
CPSF3-205ENST00000489629 CCDC195A0A1B0GUA6 201 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 CCDC154A6NI56 674 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 E7ENX8 843 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 E9PLN8 166 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 CD1AP06126 327 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 WT1P19544 449 aaPredicted RBP4.16□□□□□ -1.74
CPSF3-205ENST00000489629 GRIA3P42263 894 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 PROK1P58294 105 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 POU6F2P78424 691 aaPredicted RBP4.16□□□□□ -1.74
CPSF3-205ENST00000489629 MC2RQ01718 297 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 TAP2Q03519 686 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 ZNF844Q08AG5 666 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 MTMR1Q13613 665 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 ACAP2Q15057 778 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 PCBP2Q15366 365 aaKnown RBP eCLIP4.16□□□□□ -1.74
CPSF3-205ENST00000489629 NBPF8Q3BBV2 869 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 TSHZ1Q6ZSZ6 1077 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 PEG10Q86TG7 708 aaKnown RBP4.16□□□□□ -1.74
CPSF3-205ENST00000489629 SRRM1Q8IYB3 904 aaKnown RBP4.16□□□□□ -1.74
CPSF3-205ENST00000489629 ADGRG5Q8IZF4 528 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 PDPRQ8NCN5 879 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 NSUN7Q8NE18 718 aaKnown RBP4.16□□□□□ -1.74
CPSF3-205ENST00000489629 NSUN6Q8TEA1 469 aaKnown RBP4.16□□□□□ -1.74
CPSF3-205ENST00000489629 KAT5Q92993 513 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 CLPTM1LQ96KA5 538 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 TEKT5Q96M29 485 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 VKORC1Q9BQB6 163 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 HEPHQ9BQS7 1158 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 PACSIN1Q9BY11 444 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 IL17RBQ9NRM6 502 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 ASB6Q9NWX5 421 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 SERPINB13Q9UIV8 391 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 TRHDEQ9UKU6 1024 aa4.16□□□□□ -1.74
CPSF3-205ENST00000489629 WDR27A2RRH5 827 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 CCDC151A5D8V7 595 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 WIPF3A6NGB9 483 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 GABRDO14764 452 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 MYBL2P10244 700 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 LPOP22079 712 aaPredicted RBP4.15□□□□□ -1.75
CPSF3-205ENST00000489629 ITPKBP27987 946 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 HNRNPMP52272 730 aaKnown RBP eCLIP4.15□□□□□ -1.75
CPSF3-205ENST00000489629 KRTAP10-11P60412 298 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 DSC2Q02487 901 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 ABCB5Q2M3G0 1257 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 SH2D3CQ8N5H7 860 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 POC1BQ8TC44 478 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 TFAP2BQ92481 460 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 PGBD1Q96JS3 809 aa4.15□□□□□ -1.75
CPSF3-205ENST00000489629 CCDC8Q9H0W5 538 aaPredicted RBP4.15□□□□□ -1.75
CPSF3-205ENST00000489629 SHTN1A0MZ66 631 aa4.14□□□□□ -1.75
CPSF3-205ENST00000489629 CGB1A6NKQ9 187 aa4.14□□□□□ -1.75
CPSF3-205ENST00000489629 NT5C1B-RDH14C9J2C7 533 aa4.14□□□□□ -1.75
CPSF3-205ENST00000489629 ADM5C9JUS6 153 aa4.14□□□□□ -1.75
CPSF3-205ENST00000489629 XPOTO43592 962 aaKnown RBP4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms