RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 LNX1Q8TBB1 728 aaPredicted RBP23.19■■□□□ 1.3
SMC4-221ENST00000489573 ATRIPQ8WXE1 791 aa23.19■■□□□ 1.3
SMC4-221ENST00000489573 PPP1R10Q96QC0 940 aaKnown RBP23.19■■□□□ 1.3
SMC4-221ENST00000489573 GAD1Q99259 594 aa23.19■■□□□ 1.3
SMC4-221ENST00000489573 TMEM106CQ9BVX2 250 aa23.19■■□□□ 1.3
SMC4-221ENST00000489573 BCO2Q9BYV7 579 aa23.19■■□□□ 1.3
SMC4-221ENST00000489573 LZTFL1Q9NQ48 299 aa23.19■■□□□ 1.3
SMC4-221ENST00000489573 SLC38A7Q9NVC3 462 aa23.19■■□□□ 1.3
SMC4-221ENST00000489573 NOCTQ9UK39 431 aaKnown RBP23.19■■□□□ 1.3
SMC4-221ENST00000489573 TNFAIP3P21580 790 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 MAGEA1P43355 309 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 BPIFB4P59827 614 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 GPNMBQ14956 572 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 C9orf57Q5W0N0 161 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 TMEM270Q6UE05 265 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 ZNF662Q6ZS27 426 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 FAM43BQ6ZT52 329 aaPredicted RBP23.18■■□□□ 1.3
SMC4-221ENST00000489573 NOP9Q86U38 636 aaKnown RBP23.18■■□□□ 1.3
SMC4-221ENST00000489573 TXLNBQ8N3L3 684 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 RBBP8NLQ8NC74 664 aaPredicted RBP23.18■■□□□ 1.3
SMC4-221ENST00000489573 RNF169Q8NCN4 708 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 SLC20A1Q8WUM9 679 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 LINC01599Q8WXQ3 324 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 RSAD1Q9HA92 442 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 UBN1Q9NPG3 1134 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 NENFQ9UMX5 172 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 GTF3C5Q9Y5Q8 519 aaPredicted RBP23.18■■□□□ 1.3
SMC4-221ENST00000489573 ANO9A1A5B4 782 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 ARL5CA6NH57 179 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 ARHGAP25P42331 645 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 TNNC1P63316 161 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 SOX4Q06945 474 aaPredicted RBP23.18■■□□□ 1.3
SMC4-221ENST00000489573 PLEKHG4Q58EX7 1191 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 SLC24A5Q71RS6 500 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 ZNF598Q86UK7 904 aaKnown RBP23.18■■□□□ 1.3
SMC4-221ENST00000489573 GLYCTKQ8IVS8 523 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 SLC30A5Q8TAD4 765 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 PAWRQ96IZ0 340 aaKnown RBP23.18■■□□□ 1.3
SMC4-221ENST00000489573 ZNF560Q96MR9 790 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 CYP3A43Q9HB55 503 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 CISHQ9NSE2 258 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 NAGPAQ9UK23 515 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 ATP11BQ9Y2G3 1177 aa23.18■■□□□ 1.3
SMC4-221ENST00000489573 TANC1Q9C0D5 1861 aa23.17■■□□□ 1.3
SMC4-221ENST00000489573 CCDC85CA6NKD9 419 aa23.17■■□□□ 1.3
SMC4-221ENST00000489573 C9IYK1 514 aa23.17■■□□□ 1.3
SMC4-221ENST00000489573 PPEF2O14830 753 aa23.17■■□□□ 1.3
SMC4-221ENST00000489573 PARNO95453 639 aaKnown RBP23.17■■□□□ 1.3
SMC4-221ENST00000489573 WEE2P0C1S8 567 aa23.17■■□□□ 1.3
SMC4-221ENST00000489573 CD58P19256 250 aa23.17■■□□□ 1.3
SMC4-221ENST00000489573 IBSPP21815 317 aaPredicted RBP23.17■■□□□ 1.3
SMC4-221ENST00000489573 CCDC122Q5T0U0 273 aa23.17■■□□□ 1.3
SMC4-221ENST00000489573 C10orf76Q5T2E6 689 aa23.17■■□□□ 1.3
SMC4-221ENST00000489573 ALKBH5Q6P6C2 394 aaKnown RBP23.17■■□□□ 1.3
SMC4-221ENST00000489573 RTN4RL1Q86UN2 441 aaPredicted RBP23.17■■□□□ 1.3
SMC4-221ENST00000489573 RPUSD2Q8IZ73 545 aaKnown RBP23.17■■□□□ 1.3
SMC4-221ENST00000489573 GSTCDQ8NEC7 633 aa23.17■■□□□ 1.3
SMC4-221ENST00000489573 SEPT8Q92599 483 aa23.17■■□□□ 1.3
SMC4-221ENST00000489573 TSGA10Q9BZW7 698 aa23.17■■□□□ 1.3
SMC4-221ENST00000489573 TSPYL2Q9H2G4 693 aaPredicted RBP23.17■■□□□ 1.3
SMC4-221ENST00000489573 ACP6Q9NPH0 428 aa23.17■■□□□ 1.3
SMC4-221ENST00000489573 RCCD1A6NED2 376 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 KIF2AO00139 706 aaPredicted RBP23.16■■□□□ 1.3
SMC4-221ENST00000489573 PIRO00625 290 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 THP07101 528 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 LRPAP1P30533 357 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 PNPLA4P41247 253 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 ZNF132P52740 706 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 CDR2Q01850 454 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 NAB2Q15742 525 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 TAF3Q5VWG9 929 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 DBF4BQ8NFT6 615 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 APBB2Q92870 758 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 PPP1R12CQ9BZL4 782 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 SMYD3Q9H7B4 428 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 SEPT11Q9NVA2 429 aaKnown RBP23.16■■□□□ 1.3
SMC4-221ENST00000489573 TBX21Q9UL17 535 aa23.16■■□□□ 1.3
SMC4-221ENST00000489573 TNNT1P13805 278 aa23.15■■□□□ 1.3
SMC4-221ENST00000489573 CHRNB2P17787 502 aa23.15■■□□□ 1.3
SMC4-221ENST00000489573 RAP1GAPP47736 663 aa23.15■■□□□ 1.3
SMC4-221ENST00000489573 SCNN1GP51170 649 aa23.15■■□□□ 1.3
SMC4-221ENST00000489573 KIF5AQ12840 1032 aa23.15■■□□□ 1.3
SMC4-221ENST00000489573 ZNF677Q86XU0 584 aa23.15■■□□□ 1.3
SMC4-221ENST00000489573 SDCBP2Q9H190 292 aa23.15■■□□□ 1.3
SMC4-221ENST00000489573 WNT8AQ9H1J5 351 aa23.15■■□□□ 1.3
SMC4-221ENST00000489573 FAM124BQ9H5Z6 455 aaPredicted RBP23.15■■□□□ 1.3
SMC4-221ENST00000489573 GOLGA2P5Q9HBQ8 144 aa23.15■■□□□ 1.3
SMC4-221ENST00000489573 TFR2Q9UP52 801 aa23.15■■□□□ 1.3
SMC4-221ENST00000489573 ATP8B3O60423 1300 aa23.15■■□□□ 1.3
SMC4-221ENST00000489573 KRT86O43790 486 aa23.14■■□□□ 1.3
SMC4-221ENST00000489573 EOMESO95936 686 aa23.14■■□□□ 1.3
SMC4-221ENST00000489573 TUBB4AP04350 444 aa23.14■■□□□ 1.3
SMC4-221ENST00000489573 FAM189BP81408 668 aa23.14■■□□□ 1.3
SMC4-221ENST00000489573 FMO1Q01740 532 aa23.14■■□□□ 1.3
SMC4-221ENST00000489573 DNTTIP2Q5QJE6 756 aaKnown RBP23.14■■□□□ 1.3
SMC4-221ENST00000489573 DDX1Q92499 740 aaKnown RBP23.14■■□□□ 1.3
SMC4-221ENST00000489573 SCLYQ96I15 445 aa23.14■■□□□ 1.3
SMC4-221ENST00000489573 LACRTQ9GZZ8 138 aa23.14■■□□□ 1.3
SMC4-221ENST00000489573 MIOSQ9NXC5 875 aa23.14■■□□□ 1.3
SMC4-221ENST00000489573 PJA2O43164 708 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms