RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 PER2O15055 1255 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 TRAPPC3O43617 180 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 PHACTR2O75167 634 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 VNN1O95497 513 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 ERCC5P28715 1186 aaPredicted RBP11.9□□□□□ -0.5
UBE4B-210ENST00000488228 PIK3CAP42336 1068 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 NRIP1P48552 1158 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 MXI1P50539 228 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 MYL6P60660 151 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 RBP5P82980 135 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 RBM10P98175 930 aaKnown RBP11.9□□□□□ -0.5
UBE4B-210ENST00000488228 PSMD5Q16401 504 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 TPD52L1Q16890 204 aaPredicted RBP11.9□□□□□ -0.5
UBE4B-210ENST00000488228 SKOR2Q2VWA4 1001 aaPredicted RBP11.9□□□□□ -0.5
UBE4B-210ENST00000488228 ZSCAN23Q3MJ62 389 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 ANO6Q4KMQ2 910 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 VARS2Q5ST30 1063 aaKnown RBP11.9□□□□□ -0.5
UBE4B-210ENST00000488228 KIAA0319Q5VV43 1072 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 DSTYKQ6XUX3 929 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 USP37Q86T82 979 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 LRRC52Q8N7C0 313 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 MAFAQ8NHW3 353 aaPredicted RBP11.9□□□□□ -0.5
UBE4B-210ENST00000488228 SLC35C1Q96A29 364 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 SENP8Q96LD8 212 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 FUCA2Q9BTY2 467 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 NGRNQ9NPE2 291 aaKnown RBP11.9□□□□□ -0.5
UBE4B-210ENST00000488228 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.9□□□□□ -0.5
UBE4B-210ENST00000488228 MRPL17Q9NRX2 175 aaKnown RBP11.9□□□□□ -0.5
UBE4B-210ENST00000488228 CHST7Q9NS84 486 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 LMCD1Q9NZU5 365 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 PCDHB8Q9UN66 801 aa11.9□□□□□ -0.5
UBE4B-210ENST00000488228 DENND4AQ7Z401 1863 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 MYH10P35580 1976 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 M0QZQ0 153 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 SYN3O14994 580 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 TEX28O15482 410 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 LINC01565O15544 149 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 ADAM12O43184 909 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 CXCL14O95715 111 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 HLA-DRAP01903 254 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 C4BPAP04003 597 aaKnown RBP11.89□□□□□ -0.51
UBE4B-210ENST00000488228 CNPP09543 421 aaKnown RBP11.89□□□□□ -0.51
UBE4B-210ENST00000488228 ODC1P11926 461 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 PNPLA4P41247 253 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 AP3M2P53677 418 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 HYAL1Q12794 435 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 TRPC3Q13507 836 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 NCOA4Q13772 614 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 ZNF699Q32M78 642 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 ZACNQ401N2 412 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 CBWD6Q4V339 395 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 CBWD3Q5JTY5 395 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 CBWD5Q5RIA9 395 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 PDE12Q6L8Q7 609 aaKnown RBP11.89□□□□□ -0.51
UBE4B-210ENST00000488228 SCARA5Q6ZMJ2 495 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 C15orf39Q6ZRI6 1047 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 SV2AQ7L0J3 742 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 FRMD5Q7Z6J6 570 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 FILIP1Q7Z7B0 1213 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 IRF2BP1Q8IU81 584 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 MRPL43Q8N983 215 aaKnown RBP11.89□□□□□ -0.51
UBE4B-210ENST00000488228 VN1R2Q8NFZ6 395 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 TAS1R2Q8TE23 839 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 PIK3R5Q8WYR1 880 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 HPDLQ96IR7 371 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 XYLT2Q9H1B5 865 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 IGFLR1Q9H665 355 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 TLE6Q9H808 572 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 STK39Q9UEW8 545 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 L1RE1Q9UN81 338 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 STXBP5LQ9Y2K9 1186 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 R3HCC1Q9Y3T6 440 aaKnown RBP11.89□□□□□ -0.51
UBE4B-210ENST00000488228 SNX9Q9Y5X1 595 aa11.89□□□□□ -0.51
UBE4B-210ENST00000488228 SPTBN5Q9NRC6 3674 aaKnown RBP11.89□□□□□ -0.51
UBE4B-210ENST00000488228 DOCK6Q96HP0 2047 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 KPNA7A9QM74 516 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 CYB561D2O14569 222 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 IKBKBO14920 756 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 LILRB3O75022 631 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 CLASP2O75122 1294 aaKnown RBP11.88□□□□□ -0.51
UBE4B-210ENST00000488228 LRRN2O75325 713 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 CST3P01034 146 aaPredicted RBP11.88□□□□□ -0.51
UBE4B-210ENST00000488228 CCDC192P0DO97 292 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 MYL7Q01449 175 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 ENPEPQ07075 957 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 MYO1EQ12965 1108 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 BMS1Q14692 1282 aaKnown RBP11.88□□□□□ -0.51
UBE4B-210ENST00000488228 SKIV2LQ15477 1246 aaKnown RBP11.88□□□□□ -0.51
UBE4B-210ENST00000488228 DUSP6Q16828 381 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 WSCD1Q658N2 575 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 SPOPLQ6IQ16 392 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 ZNF280DQ6N043 979 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 LLGL2Q6P1M3 1020 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 RSPO2Q6UXX9 243 aaPredicted RBP11.88□□□□□ -0.51
UBE4B-210ENST00000488228 CREBRFQ8IUR6 639 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 TRIM59Q8IWR1 403 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 AOPEPQ8N6M6 819 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 LNX1Q8TBB1 728 aaPredicted RBP11.88□□□□□ -0.51
UBE4B-210ENST00000488228 KLHL5Q96PQ7 755 aa11.88□□□□□ -0.51
UBE4B-210ENST00000488228 PI4K2AQ9BTU6 479 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms