RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 TBXAS1P24557 533 aaPredicted RBP15.21■□□□□ 0.03
CUX1-209ENST00000487284 USP8P40818 1118 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 CUL2Q13617 745 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 TCTN1Q2MV58 587 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 H2AFVQ71UI9 128 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 NOP9Q86U38 636 aaKnown RBP15.21■□□□□ 0.03
CUX1-209ENST00000487284 RTN4RL1Q86UN2 441 aaPredicted RBP15.21■□□□□ 0.03
CUX1-209ENST00000487284 C7orf61Q8IZ16 206 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 TNS4Q8IZW8 715 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 ELMO3Q96BJ8 720 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 VWCEQ96DN2 955 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 FAM212AQ96EL1 285 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 NOX5Q96PH1 765 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 ARID3AQ99856 593 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 CCDC94Q9BW85 323 aaPredicted RBP15.21■□□□□ 0.03
CUX1-209ENST00000487284 APOL6Q9BWW8 343 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 IMPG2Q9BZV3 1241 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 RNF39Q9H2S5 420 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 ASB7Q9H672 318 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 MICAL3Q7RTP6 2002 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 A0A0A6YYK5 440 aaPredicted RBP15.2■□□□□ 0.02
CUX1-209ENST00000487284 TNNC2P02585 160 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 TMEM191BP0C7N4 346 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 CHRNB2P17787 502 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 ACO1P21399 889 aaKnown RBP15.2■□□□□ 0.02
CUX1-209ENST00000487284 IBSPP21815 317 aaPredicted RBP15.2■□□□□ 0.02
CUX1-209ENST00000487284 AKAP5P24588 427 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 TFAMQ00059 246 aaKnown RBP15.2■□□□□ 0.02
CUX1-209ENST00000487284 SLC10A6Q3KNW5 377 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 PAPD7Q5XG87 772 aaKnown RBP15.2■□□□□ 0.02
CUX1-209ENST00000487284 SPOPLQ6IQ16 392 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 SEPT8Q92599 483 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 ANKRD36BP1Q96IX9 119 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 ACAP3Q96P50 834 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 ALS2CR12Q96Q35 445 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 TRAIPQ9BWF2 469 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 FTHL17Q9BXU8 183 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 CDC23Q9UJX2 597 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 CNTN6Q9UQ52 1028 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 NUB1Q9Y5A7 615 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 LTBP2Q14767 1821 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 NCANO14594 1321 aa15.2■□□□□ 0.02
CUX1-209ENST00000487284 A0A0U1RQF3 1178 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 MEIS3P2A8K0S8 358 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 LACTBL1A8MY62 500 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 RECQL4O94761 1208 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 CST3P01034 146 aaPredicted RBP15.19■□□□□ 0.02
CUX1-209ENST00000487284 CSF2RAP15509 400 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 CYP11B1P15538 503 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 PDE6CP51160 858 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 GALCP54803 685 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 MFSD5Q6N075 450 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 SLC47A2Q86VL8 602 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 PALB2Q86YC2 1186 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 RPUSD2Q8IZ73 545 aaKnown RBP15.19■□□□□ 0.02
CUX1-209ENST00000487284 UBR7Q8N806 425 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 APBB2Q92870 758 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 HTATIP2Q9BUP3 242 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 CXCL16Q9H2A7 254 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 TSPYL2Q9H2G4 693 aaPredicted RBP15.19■□□□□ 0.02
CUX1-209ENST00000487284 RGS18Q9NS28 235 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 JRKLQ9Y4A0 524 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 PCDHGC5Q9Y5F6 944 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 SCN1AP35498 2009 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 ZNF623O75123 536 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 ATP1A1P05023 1023 aaKnown RBP15.19■□□□□ 0.02
CUX1-209ENST00000487284 NFICP08651 508 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 TMEM253P0C7T8 217 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 KRT5P13647 590 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 ATF7P17544 494 aaPredicted RBP15.19■□□□□ 0.02
CUX1-209ENST00000487284 RFC2P35250 354 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 RAB27AP51159 221 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 MYL6P60660 151 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 CDR2Q01850 454 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 SGSM1Q2NKQ1 1148 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 SCARA3Q6AZY7 606 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 DDX1Q92499 740 aaKnown RBP15.19■□□□□ 0.02
CUX1-209ENST00000487284 LPPQ93052 612 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 NIF3L1Q9GZT8 377 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 XYLT2Q9H1B5 865 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 ISCUQ9H1K1 167 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 PRKAG2Q9UGJ0 569 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 PARP2Q9UGN5 583 aa15.19■□□□□ 0.02
CUX1-209ENST00000487284 C9IYK1 514 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 ENC1O14682 589 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 BUB1O43683 1085 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 GZMAP12544 262 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 YARSP54577 528 aaKnown RBP15.18■□□□□ 0.02
CUX1-209ENST00000487284 BPIFB4P59827 614 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 FMO1Q01740 532 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 TRPC3Q13507 836 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 JADE1Q6IE81 842 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 MRPL10Q7Z7H8 261 aaKnown RBP15.18■□□□□ 0.02
CUX1-209ENST00000487284 ZNF677Q86XU0 584 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 NT5DC4Q86YG4 428 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 CD302Q8IX05 232 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 TMEM199Q8N511 208 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 RNF169Q8NCN4 708 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 LRRN4CLQ8ND94 238 aa15.18■□□□□ 0.02
CUX1-209ENST00000487284 TAF4BQ92750 862 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms