RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 KRT72Q14CN4 511 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 SF3B3Q15393 1217 aaKnown RBP11.25□□□□□ -0.61
CCDC171-208ENST00000486641 NFIL3Q16649 462 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 P3H1Q32P28 736 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 ASPRV1Q53RT3 343 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 TBC1D9BQ66K14 1250 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 PHLDB2Q86SQ0 1253 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 SLFN12Q8IYM2 578 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 CCDC89Q8N998 374 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 FBXO27Q8NI29 283 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 NMD3Q96D46 503 aaKnown RBP11.25□□□□□ -0.61
CCDC171-208ENST00000486641 FAM163AQ96GL9 167 aaPredicted RBP11.25□□□□□ -0.61
CCDC171-208ENST00000486641 PANX3Q96QZ0 392 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 CYTH2Q99418 400 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 TTC1Q99614 292 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 NAP1L4Q99733 375 aaKnown RBP11.25□□□□□ -0.61
CCDC171-208ENST00000486641 TMEM120AQ9BXJ8 343 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 OSBPL8Q9BZF1 889 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 MANSC1Q9H8J5 431 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.25□□□□□ -0.61
CCDC171-208ENST00000486641 DMAC2Q9NW81 257 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 NOCTQ9UK39 431 aaKnown RBP11.25□□□□□ -0.61
CCDC171-208ENST00000486641 NAV1Q8NEY1 1877 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 TAF1LQ8IZX4 1826 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 B2RBV5 119 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 EIF3DO15371 548 aaKnown RBP eCLIP11.25□□□□□ -0.61
CCDC171-208ENST00000486641 OPHN1O60890 802 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 PFDN1O60925 122 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 OR6B1O95007 311 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 ITGA2BP08514 1039 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 PPP4CP60510 307 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 BFSP1Q12934 665 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 PRR16Q569H4 304 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 RINT1Q6NUQ1 792 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 CCDC62Q6P9F0 684 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 SATL1Q86VE3 508 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 SLC47A2Q86VL8 602 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 MYLK4Q86YV6 388 aaPredicted RBP11.25□□□□□ -0.61
CCDC171-208ENST00000486641 SMC1BQ8NDV3 1235 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 ERMNQ8TAM6 284 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 ETNPPLQ8TBG4 499 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 MIPOL1Q8TD10 442 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 EPS8L1Q8TE68 723 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 MPP4Q96JB8 637 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 CLPTM1LQ96KA5 538 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 VPS37BQ9H9H4 285 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 TMEM165Q9HC07 324 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 ARMCX1Q9P291 453 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 MTO1Q9Y2Z2 717 aaKnown RBP11.25□□□□□ -0.61
CCDC171-208ENST00000486641 GMEB1Q9Y692 573 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 LAMB2P55268 1798 aa11.25□□□□□ -0.61
CCDC171-208ENST00000486641 CYP3A7-CYP3A51PA0A087WV96 503 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 F5H6K3 240 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 PIK3CDO00329 1044 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 CYP26A1O43174 497 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 MAGEC1O60732 1142 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 HARSP12081 509 aaKnown RBP11.24□□□□□ -0.61
CCDC171-208ENST00000486641 RFX1P22670 979 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 CYP3A7P24462 503 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 KLRC2P26717 231 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 FMO1Q01740 532 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 MAP3K10Q02779 954 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 C1QTNF12Q5T7M4 302 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 RIPOR1Q6ZS17 1223 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 CLEC10AQ8IUN9 316 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 NME8Q8N427 588 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 TCP10LQ8TDR4 215 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 LENG1Q96BZ8 264 aaPredicted RBP11.24□□□□□ -0.61
CCDC171-208ENST00000486641 PHACTR1Q9C0D0 580 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 AGPAT3Q9NRZ7 376 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 NDE1Q9NXR1 346 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 CLIC5Q9NZA1 410 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 SLAIN2Q9P270 581 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 SLC17A7Q9P2U7 560 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 UVRAGQ9P2Y5 699 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 GTF3C4Q9UKN8 822 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 CHMP2BQ9UQN3 213 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 EMSYQ7Z589 1322 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 USP17L10C9JJH3 530 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 EML1O00423 815 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 BUD23O43709 281 aaKnown RBP11.24□□□□□ -0.61
CCDC171-208ENST00000486641 ATP6V1G1O75348 118 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 FAM13AO94988 1023 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 SNHG28P0DPA3 235 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 RALAP11233 206 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 GAP43P17677 238 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 ARL4CP56559 192 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 AP2B1P63010 937 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 CENPCQ03188 943 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 MAP7Q14244 749 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 SEPT7Q16181 437 aaKnown RBP11.24□□□□□ -0.61
CCDC171-208ENST00000486641 DBN1Q16643 649 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.24□□□□□ -0.61
CCDC171-208ENST00000486641 RAPH1Q70E73 1250 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 NET1Q7Z628 596 aaPredicted RBP11.24□□□□□ -0.61
CCDC171-208ENST00000486641 SCUBE1Q8IWY4 988 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 ARHGAP24Q8N264 748 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.24□□□□□ -0.61
CCDC171-208ENST00000486641 CCDC110Q8TBZ0 833 aa11.24□□□□□ -0.61
CCDC171-208ENST00000486641 CNKSR2Q8WXI2 1034 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms