RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TBCCD1Q9NVR7 557 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 FOXJ2Q9P0K8 574 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 CTTNBP2NLQ9P2B4 639 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.34□□□□□ -1.71
VPS50-216ENST00000484954 COL4A3BPQ9Y5P4 624 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 E9PLN8 166 aa4.33□□□□□ -1.72
VPS50-216ENST00000484954 SLC43A1O75387 559 aa4.33□□□□□ -1.72
VPS50-216ENST00000484954 MTHFD1P11586 935 aaKnown RBP4.33□□□□□ -1.72
VPS50-216ENST00000484954 FXR1P51114 621 aaKnown RBP eCLIP4.33□□□□□ -1.72
VPS50-216ENST00000484954 KRT85P78386 507 aa4.33□□□□□ -1.72
VPS50-216ENST00000484954 BLOC1S1P78537 153 aa4.33□□□□□ -1.72
VPS50-216ENST00000484954 ZNF169Q14929 603 aaPredicted RBP4.33□□□□□ -1.72
VPS50-216ENST00000484954 SF3B3Q15393 1217 aaKnown RBP4.33□□□□□ -1.72
VPS50-216ENST00000484954 EFCAB2Q5VUJ9 269 aa4.33□□□□□ -1.72
VPS50-216ENST00000484954 FAM98AQ8NCA5 519 aaKnown RBP4.33□□□□□ -1.72
VPS50-216ENST00000484954 IL17RDQ8NFM7 739 aa4.33□□□□□ -1.72
VPS50-216ENST00000484954 NLGN4YQ8NFZ3 816 aaPredicted RBP4.33□□□□□ -1.72
VPS50-216ENST00000484954 NSUN6Q8TEA1 469 aaKnown RBP4.33□□□□□ -1.72
VPS50-216ENST00000484954 FBXO41Q8TF61 875 aa4.33□□□□□ -1.72
VPS50-216ENST00000484954 TMEM125Q96AQ2 219 aa4.33□□□□□ -1.72
VPS50-216ENST00000484954 VKORC1Q9BQB6 163 aa4.33□□□□□ -1.72
VPS50-216ENST00000484954 MRPS18AQ9NVS2 196 aaKnown RBP4.33□□□□□ -1.72
VPS50-216ENST00000484954 KCTD5Q9NXV2 234 aa4.33□□□□□ -1.72
VPS50-216ENST00000484954 MRFAP1Q9Y605 127 aa4.33□□□□□ -1.72
VPS50-216ENST00000484954 MYADML2A6NDP7 307 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 NT5C1B-RDH14C9J2C7 533 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 F2RL2O00254 374 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 GATA3P23771 443 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 ADKP55263 362 aaKnown RBP4.32□□□□□ -1.72
VPS50-216ENST00000484954 SNAPC2Q13487 334 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 RAB39AQ14964 217 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 CD300EQ496F6 205 aaPredicted RBP4.32□□□□□ -1.72
VPS50-216ENST00000484954 KHDC1Q4VXA5 237 aaKnown RBP4.32□□□□□ -1.72
VPS50-216ENST00000484954 SYCE2Q6PIF2 218 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 GADL1Q6ZQY3 521 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 TSHZ1Q6ZSZ6 1077 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 ZNF365Q70YC5 407 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 LNX2Q8N448 690 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 PDPRQ8NCN5 879 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 GPATCH3Q96I76 525 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 MED15Q96RN5 788 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 PACSIN1Q9BY11 444 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 IMPG2Q9BZV3 1241 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 SLC13A1Q9BZW2 595 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 JKAMPQ9P055 326 aa4.32□□□□□ -1.72
VPS50-216ENST00000484954 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.32□□□□□ -1.72
VPS50-216ENST00000484954 TRGV11A0A075B6L2 103 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 A0A1W2PS29 197 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 PRSS29PA6NIE9 313 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 ALG1L2C9J202 215 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 SUN1O94901 812 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 KCNA2P16389 499 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 MALP21145 153 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 ATP2B3Q16720 1220 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 COLEC12Q5KU26 742 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 STRIP1Q5VSL9 837 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 PAPD7Q5XG87 772 aaKnown RBP4.31□□□□□ -1.72
VPS50-216ENST00000484954 FBXO42Q6P3S6 717 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 RD3Q7Z3Z2 195 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 CFAP52Q8N1V2 620 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 SLC17A8Q8NDX2 589 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 SLC30A5Q8TAD4 765 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 ACTRT2Q8TDY3 377 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 LPIN2Q92539 896 aa4.31□□□□□ -1.72
VPS50-216ENST00000484954 SPATA31A6Q5VVP1 1343 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 PRAMEF33A0A0G2JMD5 474 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 PRAMEF10O60809 474 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 C1QL1O75973 258 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 PHKA1P46020 1223 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 RARRES1P49788 294 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 HNRNPMP52272 730 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS50-216ENST00000484954 MRPS35P82673 323 aaKnown RBP4.3□□□□□ -1.72
VPS50-216ENST00000484954 BRDTQ58F21 947 aaPredicted RBP4.3□□□□□ -1.72
VPS50-216ENST00000484954 SP5Q6BEB4 398 aaPredicted RBP4.3□□□□□ -1.72
VPS50-216ENST00000484954 SLC4A10Q6U841 1118 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 TMPRSS9Q7Z410 1059 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 COLGALT2Q8IYK4 626 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 ADGRG5Q8IZF4 528 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 PDLIM2Q96JY6 352 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 LRFN3Q9BTN0 628 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 C1orf43Q9BWL3 253 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 RSAD1Q9HA92 442 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 IL17RBQ9NRM6 502 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 CALCOCO1Q9P1Z2 691 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 TLK1Q9UKI8 766 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 INSL6Q9Y581 213 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 PCDHA3Q9Y5H8 950 aa4.3□□□□□ -1.72
VPS50-216ENST00000484954 CFAP20Q9Y6A4 193 aaKnown RBP4.3□□□□□ -1.72
VPS50-216ENST00000484954 ELFN1P0C7U0 828 aa4.29□□□□□ -1.72
VPS50-216ENST00000484954 LPOP22079 712 aaPredicted RBP4.29□□□□□ -1.72
VPS50-216ENST00000484954 PSMC1P62191 440 aaKnown RBP4.29□□□□□ -1.72
VPS50-216ENST00000484954 ZNF844Q08AG5 666 aa4.29□□□□□ -1.72
VPS50-216ENST00000484954 DYRK1AQ13627 763 aa4.29□□□□□ -1.72
VPS50-216ENST00000484954 CCDC93Q567U6 631 aa4.29□□□□□ -1.72
VPS50-216ENST00000484954 VWA1Q6PCB0 445 aa4.29□□□□□ -1.72
VPS50-216ENST00000484954 CLNKQ7Z7G1 428 aa4.29□□□□□ -1.72
VPS50-216ENST00000484954 CATIPQ7Z7H3 387 aa4.29□□□□□ -1.72
VPS50-216ENST00000484954 BOLLQ8N9W6 283 aaKnown RBP4.29□□□□□ -1.72
VPS50-216ENST00000484954 SMOC2Q9H3U7 446 aa4.29□□□□□ -1.72
VPS50-216ENST00000484954 KIAA1586Q9HCI6 787 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms