RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 PFKMP08237 780 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 PLEKP08567 350 aaPredicted RBP8.85□□□□□ -0.99
USP4-210ENST00000483212 KRT19P08727 400 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 SKILP12757 684 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 RAG1P15918 1043 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 TBXAS1P24557 533 aaPredicted RBP8.85□□□□□ -0.99
USP4-210ENST00000483212 STAT1P42224 750 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 KCNJ6P48051 423 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 ZNF132P52740 706 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 DSC1Q08554 894 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 GRIK3Q13003 919 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 MTF1Q14872 753 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 ARHGAP44Q17R89 818 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 SFMBT2Q5VUG0 894 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 C16orf59Q7L2K0 433 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 NPAS4Q8IUM7 802 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 TMEM199Q8N511 208 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 C3orf58Q8NDZ4 430 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 CCDC112Q8NEF3 446 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 ABHD8Q96I13 439 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 HPDLQ96IR7 371 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 FAM81BQ96LP2 452 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 CASD1Q96PB1 797 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 SPAG5Q96R06 1193 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 RPS6KC1Q96S38 1066 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 SLC38A7Q9NVC3 462 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 CACNG4Q9UBN1 327 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 NENFQ9UMX5 172 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 ZKSCAN5Q9Y2L8 839 aa8.85□□□□□ -0.99
USP4-210ENST00000483212 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.85□□□□□ -0.99
USP4-210ENST00000483212 ABHD14A-ACY1A0A1B0GW23 586 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 SSU72P8A0A1W2PR75 194 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 PODXLO00592 558 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 ARHGAP6O43182 974 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 EVI5O60447 810 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 GFPT2O94808 682 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 DDHD2O94830 711 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 POMCP01189 267 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 SERPING1P05155 500 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 FERP16591 822 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 CLCN1P35523 988 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 PNPLA4P41247 253 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 AARSP49588 968 aaKnown RBP eCLIP8.84□□□□□ -0.99
USP4-210ENST00000483212 GATMP50440 423 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 CLCNKBP51801 687 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 TTC3P53804 2025 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 EPHB4P54760 987 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 TUSC3Q13454 348 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 IKBKEQ14164 716 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 ASIC2Q16515 512 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 UPP1Q16831 310 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 ZNF667Q5HYK9 610 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 NOMO2Q5JPE7 1267 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 GLB1LQ6UWU2 654 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 CYP26C1Q6V0L0 522 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 ZNF571Q7Z3V5 609 aaPredicted RBP8.84□□□□□ -0.99
USP4-210ENST00000483212 ZNF280BQ86YH2 543 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 TMTC1Q8IUR5 882 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 COLGALT2Q8IYK4 626 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 C7orf61Q8IZ16 206 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 KIAA1524Q8TCG1 905 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 WHAMMQ8TF30 809 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 TRIM44Q96DX7 344 aaPredicted RBP8.84□□□□□ -0.99
USP4-210ENST00000483212 PAAF1Q9BRP4 392 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 IMPG2Q9BZV3 1241 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 SMYD3Q9H7B4 428 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 CYP3A43Q9HB55 503 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 RC3H2Q9HBD1 1191 aaKnown RBP8.84□□□□□ -0.99
USP4-210ENST00000483212 IL23AQ9NPF7 189 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 TBC1D13Q9NVG8 400 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 GDAP2Q9NXN4 497 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 NOCTQ9UK39 431 aaKnown RBP8.84□□□□□ -0.99
USP4-210ENST00000483212 INPP5FQ9Y2H2 1132 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 NME7Q9Y5B8 376 aa8.84□□□□□ -0.99
USP4-210ENST00000483212 SCN1AP35498 2009 aa8.83□□□□□ -1
USP4-210ENST00000483212 CASTOR2A6NHX0 329 aa8.83□□□□□ -1
USP4-210ENST00000483212 ZNF263O14978 683 aa8.83□□□□□ -1
USP4-210ENST00000483212 CYP26A1O43174 497 aa8.83□□□□□ -1
USP4-210ENST00000483212 DGKIO75912 1065 aa8.83□□□□□ -1
USP4-210ENST00000483212 BAIAP3O94812 1187 aa8.83□□□□□ -1
USP4-210ENST00000483212 LCA5LO95447 670 aa8.83□□□□□ -1
USP4-210ENST00000483212 WEE2P0C1S8 567 aa8.83□□□□□ -1
USP4-210ENST00000483212 ACRP10323 421 aa8.83□□□□□ -1
USP4-210ENST00000483212 IBSPP21815 317 aaPredicted RBP8.83□□□□□ -1
USP4-210ENST00000483212 RPL9P32969 192 aaKnown RBP8.83□□□□□ -1
USP4-210ENST00000483212 EIF4A3P38919 411 aaKnown RBP8.83□□□□□ -1
USP4-210ENST00000483212 RAP1GAPP47736 663 aa8.83□□□□□ -1
USP4-210ENST00000483212 TAF6P49848 677 aa8.83□□□□□ -1
USP4-210ENST00000483212 LILRA4P59901 499 aa8.83□□□□□ -1
USP4-210ENST00000483212 WDR5P61964 334 aaKnown RBP8.83□□□□□ -1
USP4-210ENST00000483212 DEFB103AP81534 67 aa8.83□□□□□ -1
USP4-210ENST00000483212 PTK2Q05397 1052 aa8.83□□□□□ -1
USP4-210ENST00000483212 KLHL30Q0D2K2 578 aa8.83□□□□□ -1
USP4-210ENST00000483212 INCA1Q0VD86 236 aa8.83□□□□□ -1
USP4-210ENST00000483212 MYO1EQ12965 1108 aa8.83□□□□□ -1
USP4-210ENST00000483212 SOWAHAQ2M3V2 549 aa8.83□□□□□ -1
USP4-210ENST00000483212 WDR72Q3MJ13 1102 aa8.83□□□□□ -1
USP4-210ENST00000483212 SCARA5Q6ZMJ2 495 aa8.83□□□□□ -1
USP4-210ENST00000483212 TOGARAM2Q6ZUX3 1019 aa8.83□□□□□ -1
USP4-210ENST00000483212 RPUSD2Q8IZ73 545 aaKnown RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms