RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 ZNF148Q9UQR1 794 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 MTA2O94776 668 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 CYP1A1P04798 512 aaPredicted RBP19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 RFX1P22670 979 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 TRIM74Q86UV6 250 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 TRIM73Q86UV7 250 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 BBOF1Q8ND07 529 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 DHX38Q92620 1227 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 LENG9Q96B70 501 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 FHDC1Q9C0D6 1143 aaPredicted RBP19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 FAM192AQ9GZU8 254 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 CYP3A7-CYP3A51PA0A087WV96 503 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 K7ENM7 598 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 HNRNPCL1O60812 293 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 USP1O94782 785 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 CYP11B1P15538 503 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 CYP3A7P24462 503 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 MXI1P50539 228 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 RHBDL3P58872 404 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 MFSD14BQ5SR56 506 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 RGS9BPQ6ZS82 235 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 C1orf186Q6ZWK4 172 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 SLC25A41Q8N5S1 370 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 CBWD1Q9BRT8 395 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 H3BRJ5 948 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 IFNB1P01574 187 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 EFTUD2Q15029 972 aaKnown RBP eCLIP19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 TCP10LQ8TDR4 215 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 HAUS1Q96CS2 278 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 KREMEN1Q96MU8 473 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 SETDB2Q96T68 719 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 SPATA16Q9BXB7 569 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 TMEM120AQ9BXJ8 343 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 ASCC2Q9H1I8 757 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 DMAC2Q9NW81 257 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 SLC17A7Q9P2U7 560 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 ZCCHC9Q8N567 271 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 PTCD3Q96EY7 689 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 CLPTM1LQ96KA5 538 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 CYLDQ9NQC7 956 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 CHCHD3Q9NX63 227 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 ZNF212Q9UDV6 495 aa19.84■□□□□ 0.77
CCDC88B-207ENST00000479965 PI4K2BG5E9Z4 385 aa19.83■□□□□ 0.77
CCDC88B-207ENST00000479965 CCNFP41002 786 aa19.83■□□□□ 0.77
CCDC88B-207ENST00000479965 UBXN2AP68543 259 aa19.83■□□□□ 0.77
CCDC88B-207ENST00000479965 GPS1Q13098 491 aa19.83■□□□□ 0.77
CCDC88B-207ENST00000479965 CLEC4GQ6UXB4 293 aa19.83■□□□□ 0.77
CCDC88B-207ENST00000479965 CPA5Q8WXQ8 436 aa19.83■□□□□ 0.77
CCDC88B-207ENST00000479965 FNBP1Q96RU3 617 aa19.83■□□□□ 0.77
CCDC88B-207ENST00000479965 TSSK1BQ9BXA7 367 aa19.83■□□□□ 0.77
CCDC88B-207ENST00000479965 MANSC1Q9H8J5 431 aa19.83■□□□□ 0.77
CCDC88B-207ENST00000479965 SRP68Q9UHB9 627 aaKnown RBP19.83■□□□□ 0.77
CCDC88B-207ENST00000479965 B2RBV5 119 aa19.83■□□□□ 0.76
CCDC88B-207ENST00000479965 TYROBPO43914 113 aa19.83■□□□□ 0.76
CCDC88B-207ENST00000479965 PDIA2Q13087 525 aaKnown RBP19.83■□□□□ 0.76
CCDC88B-207ENST00000479965 EAPPQ56P03 285 aaPredicted RBP19.83■□□□□ 0.76
CCDC88B-207ENST00000479965 LARSQ9P2J5 1176 aaKnown RBP19.83■□□□□ 0.76
CCDC88B-207ENST00000479965 PIK3CDO00329 1044 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 ENO1P06733 434 aaKnown RBP19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 DSG1Q02413 1049 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 TTC17Q96AE7 1141 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 FAM20AQ96MK3 541 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 SENP1Q9P0U3 644 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 ANGPTL2Q9UKU9 493 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 VAV3Q9UKW4 847 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 SLITRK3O94933 977 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 KRT10P13645 584 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 ATF7P17544 494 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 SSTR3P32745 418 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 ARSEP51690 589 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 PLCB3Q01970 1234 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 TCEAL1Q15170 157 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 FAM71AQ8IYT1 594 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 FIZ1Q96SL8 496 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 CENPKQ9BS16 269 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 OSBPL8Q9BZF1 889 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 PREBQ9HCU5 417 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 PSMC3IPQ9P2W1 217 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 SLC26A4O43511 780 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 NOVP48745 357 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 KDSRQ06136 332 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 LIN52Q52LA3 116 aa19.82■□□□□ 0.76
CCDC88B-207ENST00000479965 SPATA31D3P0C874 917 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 SPATA31D4Q6ZUB0 917 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 DTNBP1Q96EV8 351 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 TTC25Q96NG3 672 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 SH2D3AQ9BRG2 576 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 NDE1Q9NXR1 346 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 A6NJR5 290 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 ABHD2P08910 425 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 MFAP3P55082 362 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 ARHGAP18Q8N392 663 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 MBOAT7Q96N66 472 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 THTPAQ9BU02 230 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 POLR3CQ9BUI4 534 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 GLT8D2Q9H1C3 349 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 GALNT8Q9NY28 637 aa19.81■□□□□ 0.76
CCDC88B-207ENST00000479965 TBX3O15119 743 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 FDX1P10109 184 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 MYL2P10916 166 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms