RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 ZNF536O15090 1300 aa10.21□□□□□ -0.77
HDAC3-205ENST00000469550 MYADML2A6NDP7 307 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 ASTN1O14525 1302 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 TBX3O15119 743 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 MED24O75448 989 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 TIMP1P01033 207 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 KRT13P13646 458 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 TNFAIP3P21580 790 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 STAT2P52630 851 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 TCERG1LQ5VWI1 586 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 CCDC137Q6PK04 289 aaKnown RBP10.21□□□□□ -0.78
HDAC3-205ENST00000469550 SFR1Q86XK3 245 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 FITM2Q8N6M3 262 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 C12orf50Q8NA57 414 aaPredicted RBP10.21□□□□□ -0.78
HDAC3-205ENST00000469550 ERMNQ8TAM6 284 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 DYDC1Q8WWB3 177 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 SLCO2A1Q92959 643 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 ARHGEF2Q92974 986 aaKnown RBP10.21□□□□□ -0.78
HDAC3-205ENST00000469550 C18orf8Q96DM3 657 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 GLT1D1Q96MS3 346 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 SH3GL3Q99963 347 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 JMJD4Q9H9V9 463 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 SPC25Q9HBM1 224 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 FGFR1OP2Q9NVK5 253 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 IGSF9BQ9UPX0 1349 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 LRRC42Q9Y546 428 aa10.21□□□□□ -0.78
HDAC3-205ENST00000469550 TMEM120BA0PK00 339 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 SMIM23A6NLE4 172 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 EIF3DO15371 548 aaKnown RBP eCLIP10.2□□□□□ -0.78
HDAC3-205ENST00000469550 MTA2O94776 668 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 UNC5CO95185 931 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 RPA1P27694 616 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 PSMC2P35998 433 aaKnown RBP10.2□□□□□ -0.78
HDAC3-205ENST00000469550 PEX5P50542 639 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 ZNF211Q13398 564 aaPredicted RBP10.2□□□□□ -0.78
HDAC3-205ENST00000469550 DRAP1Q14919 205 aaPredicted RBP10.2□□□□□ -0.78
HDAC3-205ENST00000469550 UBE2SQ16763 222 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 RASIP1Q5U651 963 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 NUGGCQ68CJ6 796 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 TTC27Q6P3X3 843 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 GJB7Q6PEY0 223 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 VSTM1Q6UX27 236 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 ERICH1Q86X53 443 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 CFAP61Q8NHU2 1237 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 ARHGEF26Q96DR7 871 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 ZSWIM1Q9BR11 485 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 SEZ6LQ9BYH1 1024 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 GPR88Q9GZN0 384 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 THAP2Q9H0W7 228 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 WNT8AQ9H1J5 351 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 ZHX3Q9H4I2 956 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 OLFML3Q9NRN5 406 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 WHRNQ9P202 907 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 DBR1Q9UK59 544 aaKnown RBP10.2□□□□□ -0.78
HDAC3-205ENST00000469550 DNAJC12Q9UKB3 198 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 MTUS1Q9ULD2 1270 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 COG5Q9UP83 839 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 DNM3Q9UQ16 869 aa10.2□□□□□ -0.78
HDAC3-205ENST00000469550 FRMPD2Q68DX3 1309 aaPredicted RBP10.19□□□□□ -0.78
HDAC3-205ENST00000469550 ASB14A6NK59 587 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 ARVCFO00192 962 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 EYA4O95677 639 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 ASGR1P07306 291 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 GAP43P17677 238 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 FGFR4P22455 802 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 COILP38432 576 aaPredicted RBP10.19□□□□□ -0.78
HDAC3-205ENST00000469550 FMO5P49326 533 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 CASP4P49662 377 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 ZNF543Q08ER8 600 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 SEL1L2Q5TEA6 688 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 CCDC174Q6PII3 467 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 ADAT2Q7Z6V5 191 aaKnown RBP10.19□□□□□ -0.78
HDAC3-205ENST00000469550 CATSPER3Q86XQ3 398 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 FAM126BQ8IXS8 530 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 SLC43A3Q8NBI5 491 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 MAFAQ8NHW3 353 aaPredicted RBP10.19□□□□□ -0.78
HDAC3-205ENST00000469550 MAGEB18Q96M61 343 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 FAM161BQ96MY7 647 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 TMEM237Q96Q45 408 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 REEP2Q9BRK0 252 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 COL25A1Q9BXS0 654 aaPredicted RBP10.19□□□□□ -0.78
HDAC3-205ENST00000469550 PSTPIP2Q9H939 334 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 RNF146Q9NTX7 359 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 TXLNGQ9NUQ3 528 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 KLHL14Q9P2G3 628 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 CTNNAL1Q9UBT7 734 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 ACTL7BQ9Y614 415 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.19□□□□□ -0.78
HDAC3-205ENST00000469550 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.19□□□□□ -0.78
HDAC3-205ENST00000469550 ANKRD33BA6NCL7 494 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 SOWAHBA6NEL2 793 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 TGFB1I1O43294 461 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 PPP1R11O60927 126 aaPredicted RBP10.19□□□□□ -0.78
HDAC3-205ENST00000469550 HIP1RO75146 1068 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 SKAP2O75563 359 aaPredicted RBP10.19□□□□□ -0.78
HDAC3-205ENST00000469550 CD4P01730 458 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 FESP07332 822 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 C6orf222P0C671 652 aaPredicted RBP10.19□□□□□ -0.78
HDAC3-205ENST00000469550 GNAZP19086 355 aa10.19□□□□□ -0.78
HDAC3-205ENST00000469550 ABCB4P21439 1286 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms