RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 AOC1P19801 751 aa19.22■□□□□ 0.67
COL7A1-205ENST00000465238 HOXD13P35453 343 aa19.22■□□□□ 0.67
COL7A1-205ENST00000465238 KNOP1Q1ED39 458 aaKnown RBP19.22■□□□□ 0.67
COL7A1-205ENST00000465238 BMT2Q1RMZ1 405 aa19.22■□□□□ 0.67
COL7A1-205ENST00000465238 CWF19L1Q69YN2 538 aaKnown RBP19.22■□□□□ 0.67
COL7A1-205ENST00000465238 ARMCX5Q6P1M9 558 aa19.22■□□□□ 0.67
COL7A1-205ENST00000465238 DCLRE1AQ6PJP8 1040 aa19.22■□□□□ 0.67
COL7A1-205ENST00000465238 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.22■□□□□ 0.67
COL7A1-205ENST00000465238 HS2ST1Q7LGA3 356 aa19.22■□□□□ 0.67
COL7A1-205ENST00000465238 RSAD2Q8WXG1 361 aa19.22■□□□□ 0.67
COL7A1-205ENST00000465238 ERCC4Q92889 916 aaPredicted RBP19.22■□□□□ 0.67
COL7A1-205ENST00000465238 UROC1Q96N76 676 aa19.22■□□□□ 0.67
COL7A1-205ENST00000465238 PPP1R10Q96QC0 940 aaKnown RBP19.22■□□□□ 0.67
COL7A1-205ENST00000465238 RPF1Q9H9Y2 349 aaKnown RBP19.22■□□□□ 0.67
COL7A1-205ENST00000465238 WNT16Q9UBV4 365 aa19.22■□□□□ 0.67
COL7A1-205ENST00000465238 ZFP37Q9Y6Q3 630 aaPredicted RBP19.22■□□□□ 0.67
COL7A1-205ENST00000465238 NARSO43776 548 aaKnown RBP19.21■□□□□ 0.67
COL7A1-205ENST00000465238 B3GAT3O94766 335 aa19.21■□□□□ 0.67
COL7A1-205ENST00000465238 LDHAP00338 332 aaKnown RBP19.21■□□□□ 0.67
COL7A1-205ENST00000465238 NPR3P17342 541 aa19.21■□□□□ 0.67
COL7A1-205ENST00000465238 ADSSP30520 456 aa19.21■□□□□ 0.67
COL7A1-205ENST00000465238 HOXA9P31269 272 aa19.21■□□□□ 0.67
COL7A1-205ENST00000465238 TNFSF9P41273 254 aa19.21■□□□□ 0.67
COL7A1-205ENST00000465238 SNRPFP62306 86 aaKnown RBP19.21■□□□□ 0.67
COL7A1-205ENST00000465238 GLRA4Q5JXX5 417 aa19.21■□□□□ 0.67
COL7A1-205ENST00000465238 GET4Q7L5D6 327 aaPredicted RBP19.21■□□□□ 0.67
COL7A1-205ENST00000465238 SIX5Q8N196 739 aa19.21■□□□□ 0.67
COL7A1-205ENST00000465238 SLC44A3Q8N4M1 653 aa19.21■□□□□ 0.67
COL7A1-205ENST00000465238 DOCK6Q96HP0 2047 aa19.21■□□□□ 0.67
COL7A1-205ENST00000465238 SNX27Q96L92 541 aa19.21■□□□□ 0.67
COL7A1-205ENST00000465238 RTP3Q9BQQ7 232 aa19.21■□□□□ 0.67
COL7A1-205ENST00000465238 GTPBP4Q9BZE4 634 aaKnown RBP19.21■□□□□ 0.67
COL7A1-205ENST00000465238 PLEKHA5Q9HAU0 1116 aa19.21■□□□□ 0.67
COL7A1-205ENST00000465238 SMIM28A0A1B0GU29 152 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 PROB1E7EW31 1015 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 KIAA0391O15091 583 aaKnown RBP19.2■□□□□ 0.66
COL7A1-205ENST00000465238 TRAPPC3O43617 180 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 GFRA3O60609 400 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 C8AP07357 584 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 CXCL8P10145 99 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 SRFP11831 508 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 FGFR3P22607 806 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 ACOT2P49753 483 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 CAMK4Q16566 473 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 SLC10A6Q3KNW5 377 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 PPM1LQ5SGD2 360 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 ZBTB41Q5SVQ8 909 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 ALKAL1Q6UXT8 129 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 SPATA20Q8TB22 786 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 GOLGA5Q8TBA6 731 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 NOC3LQ8WTT2 800 aaKnown RBP19.2■□□□□ 0.66
COL7A1-205ENST00000465238 CBWD1Q9BRT8 395 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 PCIF1Q9H4Z3 704 aa19.2■□□□□ 0.66
COL7A1-205ENST00000465238 CGNQ9P2M7 1197 aaKnown RBP19.2■□□□□ 0.66
COL7A1-205ENST00000465238 CPSF3Q9UKF6 684 aaKnown RBP19.2■□□□□ 0.66
COL7A1-205ENST00000465238 MYO15AQ9UKN7 3530 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 TGFB1I1O43294 461 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 FAM189A1O60320 539 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 CFHP08603 1231 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 FSHRP23945 695 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 CLCNKBP51801 687 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 PPP2R3AQ06190 1150 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 RAB33AQ14088 237 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 UPP1Q16831 310 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 XKR4Q5GH76 650 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 ZNF658Q5TYW1 1059 aaPredicted RBP19.19■□□□□ 0.66
COL7A1-205ENST00000465238 GRASPQ7Z6J2 395 aaPredicted RBP19.19■□□□□ 0.66
COL7A1-205ENST00000465238 CD302Q8IX05 232 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 FAM212AQ96EL1 285 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 SAAL1Q96ER3 474 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 FAM213AQ9BRX8 229 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 AGPAT3Q9NRZ7 376 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 SLC38A7Q9NVC3 462 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 CNTN3Q9P232 1028 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 MTRRQ9UBK8 725 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 MAPK8IP1Q9UQF2 711 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 RIF1Q5UIP0 2472 aaKnown RBP19.19■□□□□ 0.66
COL7A1-205ENST00000465238 VPS13AQ96RL7 3174 aa19.19■□□□□ 0.66
COL7A1-205ENST00000465238 PTPRZ1P23471 2315 aaPredicted RBP19.18■□□□□ 0.66
COL7A1-205ENST00000465238 CFAP54Q96N23 3096 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 ANHXE9PGG2 379 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 TULP1O00294 542 aaPredicted RBP19.18■□□□□ 0.66
COL7A1-205ENST00000465238 CLIC2O15247 247 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 ADAM12O43184 909 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 EXTL3O43909 919 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 XYLBO75191 536 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 POU2F2P09086 479 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 KCNE1P15382 129 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 OR1D2P34982 312 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 POU5F1Q01860 360 aaKnown RBP19.18■□□□□ 0.66
COL7A1-205ENST00000465238 HTR4Q13639 388 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 ENOX2Q16206 610 aaKnown RBP19.18■□□□□ 0.66
COL7A1-205ENST00000465238 UVSSAQ2YD98 709 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 RTL10Q7L3V2 364 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 GPD1LQ8N335 351 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 GUF1Q8N442 669 aaKnown RBP19.18■□□□□ 0.66
COL7A1-205ENST00000465238 DDX27Q96GQ7 796 aaKnown RBP19.18■□□□□ 0.66
COL7A1-205ENST00000465238 HSPBP1Q9NZL4 362 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 BACE2Q9Y5Z0 518 aa19.18■□□□□ 0.66
COL7A1-205ENST00000465238 TTC26A0AVF1 554 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms