RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 UCHL3P15374 230 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 PROZP22891 400 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 PRKCIP41743 596 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 PHKA2P46019 1235 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 CYP2J2P51589 502 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 MCL1Q07820 350 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 PSMD6Q15008 389 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 PTPN14Q15678 1187 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 C10orf76Q5T2E6 689 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 TCERG1LQ5VWI1 586 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 KRT39Q6A163 491 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 TWF2Q6IBS0 349 aaKnown RBP12.71□□□□□ -0.37
USP54-209ENST00000464635 CATSPER4Q7RTX7 472 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 ADHFE1Q8IWW8 467 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 PPP2R3CQ969Q6 453 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 JAKMIP2Q96AA8 810 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 FAXDC2Q96IV6 333 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 ZNF558Q96NG5 402 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 ACO2Q99798 780 aaKnown RBP12.71□□□□□ -0.37
USP54-209ENST00000464635 STK33Q9BYT3 514 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 TLE6Q9H808 572 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 TMEM8AQ9HCN3 771 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 AGO2Q9UKV8 859 aaKnown RBP12.71□□□□□ -0.37
USP54-209ENST00000464635 TNFSF13BQ9Y275 285 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 PPP2R2CQ9Y2T4 447 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 HIDE1A8MVS5 230 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 NT5C1B-RDH14C9J2C7 533 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 B4GALT3O60512 393 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 NDUFA10O95299 355 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 EOMESO95936 686 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 SERPING1P05155 500 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 PLCB3Q01970 1234 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 CYP24A1Q07973 514 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 DUSP6Q16828 381 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 DCAF17Q5H9S7 520 aaPredicted RBP12.7□□□□□ -0.38
USP54-209ENST00000464635 TMEM31Q5JXX7 168 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 SFMBT2Q5VUG0 894 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 TRIM65Q6PJ69 517 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 ENOSF1Q7L5Y1 443 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 TMEM173Q86WV6 379 aaPredicted RBP12.7□□□□□ -0.38
USP54-209ENST00000464635 REXO1L1PQ8IX06 675 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 SLC39A11Q8N1S5 342 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 RNF149Q8NC42 400 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 SMRP1Q8NCR6 262 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 LMO3Q8TAP4 145 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 PPP1R13BQ96KQ4 1090 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 TCF25Q9BQ70 676 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 INO80BQ9C086 356 aaPredicted RBP12.7□□□□□ -0.38
USP54-209ENST00000464635 PTPRHQ9HD43 1115 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 ENTPD7Q9NQZ7 604 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 FAM207AQ9NSI2 230 aaPredicted RBP12.7□□□□□ -0.38
USP54-209ENST00000464635 FAM105AQ9NUU6 356 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 PRKAG3Q9UGI9 489 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 FAM50BQ9Y247 325 aa12.7□□□□□ -0.38
USP54-209ENST00000464635 CLDN3O15551 220 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 IPO7O95373 1038 aaKnown RBP12.69□□□□□ -0.38
USP54-209ENST00000464635 SRGAP2CP0DJJ0 459 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 JAM2P57087 298 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 ASTE1Q2TB18 679 aaPredicted RBP12.69□□□□□ -0.38
USP54-209ENST00000464635 C1orf220Q5T0J3 134 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 RAD9BQ6WBX8 426 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 C15orf39Q6ZRI6 1047 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 RRAGAQ7L523 313 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 APBB1IPQ7Z5R6 666 aaPredicted RBP12.69□□□□□ -0.38
USP54-209ENST00000464635 BCL7CQ8WUZ0 217 aaPredicted RBP12.69□□□□□ -0.38
USP54-209ENST00000464635 UBE2Q2Q8WVN8 375 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 BICD1Q96G01 975 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 CCDC42Q96M95 316 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 TSPAN18Q96SJ8 248 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 KIFC3Q9BVG8 833 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 TRAIPQ9BWF2 469 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 LSM14BQ9BX40 385 aaKnown RBP12.69□□□□□ -0.38
USP54-209ENST00000464635 HAUS4Q9H6D7 363 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 NHEJ1Q9H9Q4 299 aaPredicted RBP12.69□□□□□ -0.38
USP54-209ENST00000464635 SIX2Q9NPC8 291 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 LUC7LQ9NQ29 371 aaKnown RBP12.69□□□□□ -0.38
USP54-209ENST00000464635 CHST12Q9NRB3 414 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 SPG21Q9NZD8 308 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 GCNT4Q9P109 453 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 APEX2Q9UBZ4 518 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 LZTS1Q9Y250 596 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 INPP5FQ9Y2H2 1132 aa12.69□□□□□ -0.38
USP54-209ENST00000464635 USP15Q9Y4E8 981 aaPredicted RBP12.69□□□□□ -0.38
USP54-209ENST00000464635 LRRC53A6NM62 1247 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 ABLIM1O14639 778 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 OGTO15294 1046 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 GPR37L1O60883 481 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 PRKCBP05771 671 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 FERP16591 822 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 SLC9A1P19634 815 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 AXLP30530 894 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 PPM1AP35813 382 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 KLK7P49862 253 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 MXI1P50539 228 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 AFF1P51825 1210 aaKnown RBP12.68□□□□□ -0.38
USP54-209ENST00000464635 BCAR1P56945 870 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 POLR2FP61218 127 aaKnown RBP12.68□□□□□ -0.38
USP54-209ENST00000464635 ETF1P62495 437 aaKnown RBP12.68□□□□□ -0.38
USP54-209ENST00000464635 MYL7Q01449 175 aa12.68□□□□□ -0.38
USP54-209ENST00000464635 TUBB2AQ13885 445 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms