RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ZNF280D	Q6N043	979 aa		12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	LRRC15	Q8TF66	581 aa		12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	ATRIP	Q8WXE1	791 aa		12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	LRRC3B	Q96PB8	259 aa		12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	TRMT61B	Q9BVS5	477 aa	Known RBP	12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	FAM126A	Q9BYI3	521 aa	Predicted RBP	12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	BRD9	Q9H8M2	597 aa		12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	NCDN	Q9UBB6	729 aa		12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	DNM3	Q9UQ16	869 aa		12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	MRPS17	Q9Y2R5	130 aa	Known RBP	12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	STK24	Q9Y6E0	443 aa		12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	F5	P12259	2224 aa		12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	CACNA1B	Q00975	2339 aa		12.19	□□□□□ -0.46
PTPN7-204	ENST00000462815	FRY	Q5TBA9	3013 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	MAN2B1	O00754	1011 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	ADRB2	P07550	413 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	OR4Q2	P0C623	313 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	PLS3	P13797	630 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	GDI1	P31150	447 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	MCM4	P33991	863 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	TNFSF9	P41273	254 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	SLC12A3	P55017	1021 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	MLLT6	P55198	1093 aa	Predicted RBP	12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	FCHO2	Q0JRZ9	810 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	TEAD2	Q15562	447 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	ARSH	Q5FYA8	562 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	STXBP5	Q5T5C0	1151 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	ZPBP2	Q6X784	338 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	MFSD6L	Q8IWD5	586 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	LEMD2	Q8NC56	503 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	DEPDC1B	Q8WUY9	529 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	FAM3C	Q92520	227 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	IRF7	Q92985	503 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	IER2	Q9BTL4	223 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	TIPIN	Q9BVW5	301 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	NDRG2	Q9UN36	371 aa	Known RBP	12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	NUB1	Q9Y5A7	615 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	PIAS3	Q9Y6X2	628 aa		12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	NUP210	Q8TEM1	1887 aa	Predicted RBP	12.18	□□□□□ -0.46
PTPN7-204	ENST00000462815	TPR	P12270	2363 aa	Known RBP	12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	HEPACAM2	A8MVW5	462 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815		K7ESF4	209 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	LAD1	O00515	517 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	PPEF2	O14830	753 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	PAPSS2	O95340	614 aa	Predicted RBP	12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	HARS	P12081	509 aa	Known RBP	12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	NCKAP1L	P55160	1127 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	ATP2C1	P98194	919 aa	Predicted RBP	12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	SATB1	Q01826	763 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	SPAG1	Q07617	926 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	DMWD	Q09019	674 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	TMEM119	Q4V9L6	283 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	KRT79	Q5XKE5	535 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	TXNDC11	Q6PKC3	985 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	TTC9B	Q8N6N2	239 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	GPR161	Q8N6U8	529 aa	Known RBP	12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	SYT2	Q8N9I0	419 aa	Predicted RBP	12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	APPL2	Q8NEU8	664 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	LMAN1L	Q9HAT1	526 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	PLEKHA5	Q9HAU0	1116 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	ASAH2	Q9NR71	780 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	C2orf42	Q9NWW7	574 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	ANKFY1	Q9P2R3	1169 aa		12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	NOL7	Q9UMY1	257 aa	Known RBP	12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	TIMM13	Q9Y5L4	95 aa	Predicted RBP	12.17	□□□□□ -0.46
PTPN7-204	ENST00000462815	NPHP3-ACAD11	A0A0J9YXS1	232 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815		A0A1W2PRU2	124 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	MTMR11	A4FU01	709 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	PIGR	P01833	764 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	MYL4	P12829	197 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	CYP3A5	P20815	502 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	HOXC13	P31276	330 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	GUCY2F	P51841	1108 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	LMNB2	Q03252	620 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	YWHAH	Q04917	246 aa	Predicted RBP	12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	RAD51AP2	Q09MP3	1159 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	GPR17	Q13304	367 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	ENOX2	Q16206	610 aa	Known RBP	12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	CYP4A22	Q5TCH4	519 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	IQCE	Q6IPM2	695 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	CENPP	Q6IPU0	288 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	SLC39A4	Q6P5W5	647 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	GAREM2	Q75VX8	874 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	ZNF512	Q96ME7	567 aa	Predicted RBP	12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	PGLYRP2	Q96PD5	576 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	TMEM209	Q96SK2	561 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	FIZ1	Q96SL8	496 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	TCHP	Q9BT92	498 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	RAB34	Q9BZG1	259 aa		12.16	□□□□□ -0.46
PTPN7-204	ENST00000462815	ASPM	Q8IZT6	3477 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	MYBPHL	A2RUH7	354 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	LACTBL1	A8MY62	500 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	PRR5-ARHGAP8	B1AHC4	643 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	CHAD	O15335	359 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	HR	O43593	1189 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	CLTA	P09496	248 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	CPB1	P15086	417 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	CCNE1	P24864	410 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	SOX9	P48436	509 aa		12.15	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms