RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 M0QZQ0 153 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 ZNF263O14978 683 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 OGTO15294 1046 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 TBCAO75347 108 aaKnown RBP16.73■□□□□ 0.27
SKA3-204ENST00000462482 OAZ2O95190 189 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 PSMC3P17980 439 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 TARSP26639 723 aaKnown RBP16.73■□□□□ 0.27
SKA3-204ENST00000462482 GDI1P31150 447 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 MCM2P49736 904 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 ARMCX5Q6P1M9 558 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 RNF19BQ6ZMZ0 732 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 CD302Q8IX05 232 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 BEST2Q8NFU1 509 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 CLDN23Q96B33 292 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 FAM212AQ96EL1 285 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 TMX3Q96JJ7 454 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 MSTO1Q9BUK6 570 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 PARVGQ9HBI0 331 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 ZSCAN32Q9NX65 697 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 NDRG2Q9UN36 371 aaKnown RBP16.73■□□□□ 0.27
SKA3-204ENST00000462482 YIPF1Q9Y548 306 aa16.73■□□□□ 0.27
SKA3-204ENST00000462482 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.73■□□□□ 0.27
SKA3-204ENST00000462482 TIMM13Q9Y5L4 95 aaPredicted RBP16.73■□□□□ 0.27
SKA3-204ENST00000462482 RIF1Q5UIP0 2472 aaKnown RBP16.72■□□□□ 0.27
SKA3-204ENST00000462482 MEFVO15553 781 aaPredicted RBP16.72■□□□□ 0.27
SKA3-204ENST00000462482 ODC1P11926 461 aa16.72■□□□□ 0.27
SKA3-204ENST00000462482 OVOS1Q6IE37 1185 aa16.72■□□□□ 0.27
SKA3-204ENST00000462482 MAML2Q8IZL2 1156 aaPredicted RBP16.72■□□□□ 0.27
SKA3-204ENST00000462482 HS6ST3Q8IZP7 471 aa16.72■□□□□ 0.27
SKA3-204ENST00000462482 ZSCAN18Q8TBC5 510 aaPredicted RBP16.72■□□□□ 0.27
SKA3-204ENST00000462482 CSGALNACT1Q8TDX6 532 aa16.72■□□□□ 0.27
SKA3-204ENST00000462482 REEP2Q9BRK0 252 aa16.72■□□□□ 0.27
SKA3-204ENST00000462482 CEP72Q9P209 647 aa16.72■□□□□ 0.27
SKA3-204ENST00000462482 TBX20Q9UMR3 447 aa16.72■□□□□ 0.27
SKA3-204ENST00000462482 LACTBL1A8MY62 500 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 TRAK2O60296 914 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 FGF19O95750 216 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 TYMPP19971 482 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 FCARP24071 287 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 CCR2P41597 374 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 NRLP54845 237 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 GPR17Q13304 367 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 MYBPC2Q14324 1141 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 TEAD2Q15562 447 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 C8orf34Q49A92 452 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 ARSHQ5FYA8 562 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 LARP1BQ659C4 914 aaKnown RBP16.71■□□□□ 0.27
SKA3-204ENST00000462482 GPR161Q8N6U8 529 aaKnown RBP16.71■□□□□ 0.27
SKA3-204ENST00000462482 FAM3CQ92520 227 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 PGLYRP2Q96PD5 576 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 IER2Q9BTL4 223 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 FAM126AQ9BYI3 521 aaPredicted RBP16.71■□□□□ 0.27
SKA3-204ENST00000462482 ZNF334Q9HCZ1 680 aaPredicted RBP16.71■□□□□ 0.27
SKA3-204ENST00000462482 TRPV5Q9NQA5 729 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 ASB3Q9Y575 518 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 PIAS3Q9Y6X2 628 aa16.71■□□□□ 0.27
SKA3-204ENST00000462482 MTCL1Q9Y4B5 1905 aaKnown RBP16.7■□□□□ 0.26
SKA3-204ENST00000462482 DPYSL4O14531 572 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 PIGRP01833 764 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 GJA1P17302 382 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 LONP1P36776 959 aaKnown RBP16.7■□□□□ 0.26
SKA3-204ENST00000462482 TNFSF9P41273 254 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 VIPR2P41587 438 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 EPHA5P54756 1037 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 DUSP4Q13115 394 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 PUM1Q14671 1186 aaKnown RBP eCLIP16.7■□□□□ 0.26
SKA3-204ENST00000462482 ZBTB6Q15916 424 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 ENOX2Q16206 610 aaKnown RBP16.7■□□□□ 0.26
SKA3-204ENST00000462482 ARHGAP15Q53QZ3 475 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 C1orf228Q6PIY5 440 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 VITQ6UXI7 678 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 DGLUCYQ7Z3D6 616 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 ITIH5Q86UX2 942 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 METTL23Q86XA0 190 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 MFSD6LQ8IWD5 586 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 SUMF1Q8NBK3 374 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 FAM200AQ8TCP9 573 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 KCNN1Q92952 543 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 MSANTD3Q96H12 275 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 ZSWIM3Q96MP5 696 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 TRPV4Q9HBA0 871 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 RAB23Q9ULC3 237 aa16.7■□□□□ 0.26
SKA3-204ENST00000462482 FAM186AA6NE01 2351 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 HEPACAM2A8MVW5 462 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 CENPBP07199 599 aaPredicted RBP16.69■□□□□ 0.26
SKA3-204ENST00000462482 OR4Q2P0C623 313 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 AARSP49588 968 aaKnown RBP eCLIP16.69■□□□□ 0.26
SKA3-204ENST00000462482 KPNA1P52294 538 aaPredicted RBP16.69■□□□□ 0.26
SKA3-204ENST00000462482 TMEM132DQ14C87 1099 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 VEPH1Q14D04 833 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 TAF12Q16514 161 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 SPATA1Q5VX52 437 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 SLFN12LQ6IEE8 588 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 BRAPQ7Z569 592 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 MAP4K3Q8IVH8 894 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 KRI1Q8N9T8 703 aaKnown RBP16.69■□□□□ 0.26
SKA3-204ENST00000462482 RMDN1Q96DB5 314 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 GCNAQ96QF7 691 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 HAPLN2Q9GZV7 340 aa16.69■□□□□ 0.26
SKA3-204ENST00000462482 DSEQ9UL01 958 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms