RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 KRT13P13646 458 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 BMP6P22004 513 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 PNPLA4P41247 253 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 FXR1P51114 621 aaKnown RBP eCLIP9.42□□□□□ -0.9
COL28A1-205ENST00000453441 MCCD1P59942 119 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-205ENST00000453441 CYP24A1Q07973 514 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 NAB2Q15742 525 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 DUOXA2Q1HG44 320 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 SEZ6Q53EL9 994 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 GLRA4Q5JXX5 417 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 ZBTB41Q5SVQ8 909 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 SPATA1Q5VX52 437 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 TTI2Q6NXR4 508 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 CAVIN1Q6NZI2 390 aaKnown RBP9.42□□□□□ -0.9
COL28A1-205ENST00000453441 PDXDC1Q6P996 788 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 ZNF280BQ86YH2 543 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 CBWD2Q8IUF1 395 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 ARNTL2Q8WYA1 636 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 IGSF21Q96ID5 467 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 ANKRD36BP1Q96IX9 119 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 CGRRF1Q99675 332 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 C17orf80Q9BSJ5 609 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 NAT10Q9H0A0 1025 aaKnown RBP9.42□□□□□ -0.9
COL28A1-205ENST00000453441 IKZF4Q9H2S9 585 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 MIOSQ9NXC5 875 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 TMEM63CQ9P1W3 806 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 ITGA11Q9UKX5 1188 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 R3HCC1Q9Y3T6 440 aaKnown RBP9.42□□□□□ -0.9
COL28A1-205ENST00000453441 SF3B1O75533 1304 aaKnown RBP eCLIP9.41□□□□□ -0.9
COL28A1-205ENST00000453441 GOLGA8IPA6NC78 632 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 GOLGA8JA6NMD2 632 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 NRP1O14786 923 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 MEFVO15553 781 aaPredicted RBP9.41□□□□□ -0.9
COL28A1-205ENST00000453441 FGF18O76093 207 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 TMEM191BP0C7N4 346 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 CCDC192P0DO97 292 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 POU3F3P20264 500 aaPredicted RBP9.41□□□□□ -0.9
COL28A1-205ENST00000453441 GTF2H1P32780 548 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 OR1G1P47890 313 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 SLC11A1P49279 550 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 AFF1P51825 1210 aaKnown RBP9.41□□□□□ -0.9
COL28A1-205ENST00000453441 CLDN10P78369 228 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 CREMQ03060 361 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 GPM6BQ13491 265 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 NFKBIBQ15653 356 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 UPP1Q16831 310 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 CEP135Q66GS9 1140 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 ANKRD40Q6AI12 368 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 ISM2Q6H9L7 571 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 JADE1Q6IE81 842 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 KLHL10Q6JEL2 608 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 FRMD5Q7Z6J6 570 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 FILIP1Q7Z7B0 1213 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 DDX53Q86TM3 631 aaKnown RBP9.41□□□□□ -0.9
COL28A1-205ENST00000453441 BPHLQ86WA6 291 aaPredicted RBP9.41□□□□□ -0.9
COL28A1-205ENST00000453441 FAM114A1Q8IWE2 563 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 FAM186BQ8IYM0 893 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 CSGALNACT2Q8N6G5 542 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 LRRC52Q8N7C0 313 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 KLHL23Q8NBE8 558 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 PPP2R3CQ969Q6 453 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 ZNF560Q96MR9 790 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 ZMAT2Q96NC0 199 aaKnown RBP9.41□□□□□ -0.9
COL28A1-205ENST00000453441 GAS2L1Q99501 681 aaPredicted RBP9.41□□□□□ -0.9
COL28A1-205ENST00000453441 NGRNQ9NPE2 291 aaKnown RBP9.41□□□□□ -0.9
COL28A1-205ENST00000453441 DNAJB4Q9UDY4 337 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 ADAM28Q9UKQ2 775 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 PLAGL2Q9UPG8 496 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 CTNND2Q9UQB3 1225 aa9.41□□□□□ -0.9
COL28A1-205ENST00000453441 LAMA2P24043 3122 aaKnown RBP9.4□□□□□ -0.9
COL28A1-205ENST00000453441 CASTOR2A6NHX0 329 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 PODXLO00592 558 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 LPXNO60711 386 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 TADA2AO75478 443 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 AKAP3O75969 853 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 B3GAT3O94766 335 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 ARHGEF15O94989 841 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 NFICP08651 508 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 TNNI1P19237 187 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 VAMP7P51809 220 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 MARSP56192 900 aaKnown RBP9.4□□□□□ -0.9
COL28A1-205ENST00000453441 RBP5P82980 135 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 TFAMQ00059 246 aaKnown RBP9.4□□□□□ -0.9
COL28A1-205ENST00000453441 BFSP1Q12934 665 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 TPD52L1Q16890 204 aaPredicted RBP9.4□□□□□ -0.9
COL28A1-205ENST00000453441 CTC1Q2NKJ3 1217 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 DPCR1Q3MIW9 517 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 TIGD5Q53EQ6 642 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 PARD3BQ8TEW8 1205 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 LRRN4Q8WUT4 740 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 CCDC127Q96BQ5 260 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 HERC2P3Q9BVR0 1158 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 OXCT2Q9BYC2 517 aaPredicted RBP9.4□□□□□ -0.9
COL28A1-205ENST00000453441 TTYH1Q9H313 450 aaPredicted RBP9.4□□□□□ -0.9
COL28A1-205ENST00000453441 THAP9Q9H5L6 903 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 PDE11AQ9HCR9 933 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 INTS13Q9NVM9 706 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 DPP3Q9NY33 737 aa9.4□□□□□ -0.9
COL28A1-205ENST00000453441 ARMCX3Q9UH62 379 aaPredicted RBP9.4□□□□□ -0.9
COL28A1-205ENST00000453441 ANO9A1A5B4 782 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms