RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PIGRP01833 764 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 LMNAP02545 664 aaKnown RBP7.69□□□□□ -1.18
VPS41-208ENST00000448833 PDIA4P13667 645 aaKnown RBP7.69□□□□□ -1.18
VPS41-208ENST00000448833 CPB1P15086 417 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 GLULP15104 373 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 TIE1P35590 1138 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 BRCC3P46736 316 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 ALDH1A3P47895 512 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 ZNF131P52739 623 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 EPHB3P54753 998 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 MLLT6P55198 1093 aaPredicted RBP7.69□□□□□ -1.18
VPS41-208ENST00000448833 ARPP19P56211 112 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 NTHL1P78549 312 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 SOX4Q06945 474 aaPredicted RBP7.69□□□□□ -1.18
VPS41-208ENST00000448833 SMARCB1Q12824 385 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 MYBPC2Q14324 1141 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 MLF2Q15773 248 aaPredicted RBP7.69□□□□□ -1.18
VPS41-208ENST00000448833 ZBTB6Q15916 424 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 ARSHQ5FYA8 562 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 DSTYKQ6XUX3 929 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 ZNF852Q6ZMS4 543 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 KCNK18Q7Z418 384 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 FRMD5Q7Z6J6 570 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 GPBP1Q86WP2 473 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 METTL23Q86XA0 190 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 NT5DC4Q86YG4 428 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 NPAS3Q8IXF0 933 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 C3orf58Q8NDZ4 430 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 ITFG1Q8TB96 612 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 FEZF2Q8TBJ5 459 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 KCNG4Q8TDN1 519 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 DNASE1L2Q92874 299 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 C18orf25Q96B23 403 aaPredicted RBP7.69□□□□□ -1.18
VPS41-208ENST00000448833 HVCN1Q96D96 273 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 ZBTB45Q96K62 511 aaPredicted RBP7.69□□□□□ -1.18
VPS41-208ENST00000448833 PLIN2Q99541 437 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 CORO1BQ9BR76 489 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 IER2Q9BTL4 223 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 MSTO1Q9BUK6 570 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 CCSER1Q9C0I3 900 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 ST6GALNAC4Q9H4F1 302 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 ASB7Q9H672 318 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 TRPV5Q9NQA5 729 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 ASAH2Q9NR71 780 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 SEL1LQ9UBV2 794 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 STK17AQ9UEE5 414 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 ZMYM5Q9UJ78 669 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 FBXO4Q9UKT5 387 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 EXOC7Q9UPT5 735 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 INSL5Q9Y5Q6 135 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 PTPRZ1P23471 2315 aaPredicted RBP7.69□□□□□ -1.18
VPS41-208ENST00000448833 MYO15AQ9UKN7 3530 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 A0A0B4J269 797 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 FAM170BA6NMN3 283 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 K7ENM7 598 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 LAMTOR5O43504 91 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 LDHAP00338 332 aaKnown RBP7.68□□□□□ -1.18
VPS41-208ENST00000448833 ADRB2P07550 413 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 CXCL8P10145 99 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 ODC1P11926 461 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 GAP43P17677 238 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 TYMPP19971 482 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 RPS9P46781 194 aaKnown RBP7.68□□□□□ -1.18
VPS41-208ENST00000448833 TUFMP49411 452 aaKnown RBP7.68□□□□□ -1.18
VPS41-208ENST00000448833 NRLP54845 237 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 GTF2BQ00403 316 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 ADCY1Q08828 1119 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 GPR17Q13304 367 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 SNW1Q13573 536 aaKnown RBP7.68□□□□□ -1.18
VPS41-208ENST00000448833 SF3A1Q15459 793 aaKnown RBP7.68□□□□□ -1.18
VPS41-208ENST00000448833 SPECC1Q5M775 1068 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 SPATA1Q5VX52 437 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 OVOS1Q6IE37 1185 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 ASCL5Q7RTU5 278 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 ITIH5Q86UX2 942 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 THEM5Q8N1Q8 247 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 GPR161Q8N6U8 529 aaKnown RBP7.68□□□□□ -1.18
VPS41-208ENST00000448833 C2orf15Q8WU43 125 aaKnown RBP7.68□□□□□ -1.18
VPS41-208ENST00000448833 DEPDC1BQ8WUY9 529 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 LARP4BQ92615 738 aaKnown RBP7.68□□□□□ -1.18
VPS41-208ENST00000448833 RAD54LQ92698 747 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 SMARCD2Q92925 531 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 SECISBP2LQ93073 1101 aaKnown RBP7.68□□□□□ -1.18
VPS41-208ENST00000448833 MCRS1Q96EZ8 462 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 MSANTD3Q96H12 275 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 REEP2Q9BRK0 252 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 DDX23Q9BUQ8 820 aaKnown RBP7.68□□□□□ -1.18
VPS41-208ENST00000448833 TRMT61BQ9BVS5 477 aaKnown RBP7.68□□□□□ -1.18
VPS41-208ENST00000448833 FAM126AQ9BYI3 521 aaPredicted RBP7.68□□□□□ -1.18
VPS41-208ENST00000448833 LRRC27Q9C0I9 530 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 ZHX3Q9H4I2 956 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 BRD9Q9H8M2 597 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 HCFC1R1Q9NWW0 138 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 CACNA1IQ9P0X4 2223 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 PATJQ8NI35 1801 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 FAM186AA6NE01 2351 aa7.68□□□□□ -1.18
VPS41-208ENST00000448833 RIF1Q5UIP0 2472 aaKnown RBP7.67□□□□□ -1.18
VPS41-208ENST00000448833 NUP210Q8TEM1 1887 aaPredicted RBP7.67□□□□□ -1.18
VPS41-208ENST00000448833 LACTBL1A8MY62 500 aa7.67□□□□□ -1.18
VPS41-208ENST00000448833 KINO60870 393 aaKnown RBP7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms