RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 SNTG2Q9NY99 539 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.74□□□□□ -0.37
NEK1-201ENST00000439128 FAM205AQ6ZU69 1335 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 ARHGAP10A1A4S6 786 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 SCP2P22307 547 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 GRK4P32298 578 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 FLT3LGP49771 235 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 EFEMP1Q12805 493 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 ERLEC1Q96DZ1 483 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 PPP1R13BQ96KQ4 1090 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 MCEEQ96PE7 176 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 NMRK2Q9NPI5 230 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 APOBEC3HQ6NTF7 200 aaKnown RBP12.74□□□□□ -0.37
NEK1-201ENST00000439128 AIPL1Q9NZN9 384 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 MROH7Q68CQ1 1323 aa12.74□□□□□ -0.37
NEK1-201ENST00000439128 FAM95CA0A1B0GW59 222 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 CCDC78A2IDD5 438 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 EIF3DO15371 548 aaKnown RBP eCLIP12.73□□□□□ -0.37
NEK1-201ENST00000439128 SLC26A4O43511 780 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 TGFB3P10600 412 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 AKAP5P24588 427 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 OAZ1P54368 228 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 PHEXP78562 749 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 RABGAP1LQ5R372 815 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 HERC6Q8IVU3 1022 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 POLR3CQ9BUI4 534 aaPredicted RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 TRIM9Q9C026 710 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 TAF1DQ9H5J8 278 aaPredicted RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 TRIM45Q9H8W5 580 aaPredicted RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 SUN2Q9UH99 717 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 TIMM13Q9Y5L4 95 aaPredicted RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 OGTO15294 1046 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 KDM1AO60341 852 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 NCF2P19878 526 aaPredicted RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 ETF1P62495 437 aaKnown RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 ATP11CQ8NB49 1132 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 DBR1Q9UK59 544 aaKnown RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 DIS3Q9Y2L1 958 aaKnown RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 CFAP99D6REC4 459 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 KRT37O76014 449 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 ALDH1A2O94788 518 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 ENDOD1O94919 500 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 PCDH8O95206 1070 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 ACSL3O95573 720 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 HSPA8P11142 646 aaKnown RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 HOXA10P31260 410 aaPredicted RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 CHRNA3P32297 505 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 GTF2H1P32780 548 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 LAMTOR4Q0VGL1 99 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 PALB2Q86YC2 1186 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 RGL4Q8IZJ4 473 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 ATP8B4Q8TF62 1192 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 DDX27Q96GQ7 796 aaKnown RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 MYMKA6NI61 221 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 GOLGA8KD6RF30 607 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 KCNN4O15554 427 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 MFAP3LO75121 409 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 SLC2A3P11169 496 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 BRD2P25440 801 aaKnown RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 CDC25BP30305 580 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 GPAT2Q6NUI2 795 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 ZFPM1Q8IX07 1006 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 PDZD8Q8NEN9 1154 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 REPS2Q8NFH8 660 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 CLMNQ96JQ2 1002 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 ADAM2Q99965 735 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 CCSER1Q9C0I3 900 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 DDX4Q9NQI0 724 aaKnown RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 APEX2Q9UBZ4 518 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 PXDNLA1KZ92 1463 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 SLC12A8A0AV02 714 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 FMO5P49326 533 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 ANTXR2P58335 489 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 CAPRIN1Q14444 709 aaKnown RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 ADGRA1Q86SQ6 560 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 PGLYRP2Q96PD5 576 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 MRPL17Q9NRX2 175 aaKnown RBP12.73□□□□□ -0.37
NEK1-201ENST00000439128 KRT82Q9NSB4 513 aa12.73□□□□□ -0.37
NEK1-201ENST00000439128 FOXN1O15353 648 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 EIF3EP60228 445 aaKnown RBP12.72□□□□□ -0.37
NEK1-201ENST00000439128 ACOT1Q86TX2 421 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 TRAPPC12Q8WVT3 735 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 CALR3Q96L12 384 aaKnown RBP12.72□□□□□ -0.37
NEK1-201ENST00000439128 C17orf75Q9HAS0 396 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 TMEM8AQ9HCN3 771 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 SLC37A4O43826 429 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 BAG2O95816 211 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 GPS1Q13098 491 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 SYCP2LQ5T4T6 812 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 ATXN7L3BQ96GX2 97 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 WDCPQ9H6R7 721 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.72□□□□□ -0.37
NEK1-201ENST00000439128 LATS2Q9NRM7 1088 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 NDUFS3O75489 264 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 MAP3K7CLP57077 242 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 CUL1Q13616 776 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 MDH1BQ5I0G3 518 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 ZBTB41Q5SVQ8 909 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 CATSPERGQ6ZRH7 1159 aa12.72□□□□□ -0.37
NEK1-201ENST00000439128 RBM23Q86U06 439 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms