RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 RNPEPQ9H4A4 650 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 ZNF768Q9H5H4 540 aaKnown RBP5.2□□□□□ -1.58
USP40-204ENST00000427947 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.2□□□□□ -1.58
USP40-204ENST00000427947 KLHL11Q9NVR0 708 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 CEP72Q9P209 647 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 USP25Q9UHP3 1055 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 CDYLQ9Y232 598 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 FAM50BQ9Y247 325 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 PRSS29PA6NIE9 313 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 PLSCR1O15162 318 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 ANXA1P04083 346 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 HRGP04196 525 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 C1SP09871 688 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 KITP10721 976 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 NPR1P16066 1061 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 FAM193AP78312 1265 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 HSD11B2P80365 405 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 FAM189BP81408 668 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 OCA2Q04671 838 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 HLTFQ14527 1009 aaKnown RBP eCLIP5.19□□□□□ -1.58
USP40-204ENST00000427947 EMC10Q5UCC4 262 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 CYB5RLQ6IPT4 315 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 APOA5Q6Q788 366 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 PDPRQ8NCN5 879 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 LRTOMTQ8WZ04 291 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 BHMT2Q9H2M3 363 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 RSAD1Q9HA92 442 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 ATP6V0A4Q9HBG4 840 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 PIH1D1Q9NWS0 290 aaKnown RBP5.19□□□□□ -1.58
USP40-204ENST00000427947 PCDHGB6Q9Y5F9 930 aa5.19□□□□□ -1.58
USP40-204ENST00000427947 A0A1B0GTW7 788 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 CCDC78A2IDD5 438 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 GOLIM4O00461 696 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 NCR1O76036 304 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 ADRB1P08588 477 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 FGFR4P22455 802 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 PEX2P28328 305 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 SLC7A1P30825 629 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 SLC25A3Q00325 362 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 CRB2Q5IJ48 1285 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 CCSAPQ6IQ19 270 aaPredicted RBP5.18□□□□□ -1.58
USP40-204ENST00000427947 MAPKAPK5Q8IW41 473 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 CCDC146Q8IYE0 955 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 FAM43AQ8N2R8 423 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 ZNF276Q8N554 614 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 IL31RAQ8NI17 732 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 SCAMP4Q969E2 229 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 MRGPRX1Q96LB2 322 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 PNKPQ96T60 521 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 P2RX7Q99572 595 aaKnown RBP5.18□□□□□ -1.58
USP40-204ENST00000427947 GPR20Q99678 358 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 SARGQ9BW04 601 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 SLC46A2Q9BY10 475 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 TINAGL1Q9GZM7 467 aaPredicted RBP5.18□□□□□ -1.58
USP40-204ENST00000427947 ZNF703Q9H7S9 590 aaPredicted RBP5.18□□□□□ -1.58
USP40-204ENST00000427947 GPR35Q9HC97 309 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 DDX21Q9NR30 783 aaKnown RBP eCLIP5.18□□□□□ -1.58
USP40-204ENST00000427947 HSFX1Q9UBD0 423 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 TPCN1Q9ULQ1 816 aa5.18□□□□□ -1.58
USP40-204ENST00000427947 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.18□□□□□ -1.58
USP40-204ENST00000427947 KRTAP9-7A8MTY7 169 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 E9PLN8 166 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 M0QYG6 137 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 RNASET2O00584 256 aaKnown RBP5.17□□□□□ -1.58
USP40-204ENST00000427947 PRRG2O14669 202 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 MGEA5O60502 916 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 ERN1O75460 977 aaKnown RBP5.17□□□□□ -1.58
USP40-204ENST00000427947 GPANK1O95872 356 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 MYL1P05976 194 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 TRIM27P14373 513 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 PURAQ00577 322 aaKnown RBP5.17□□□□□ -1.58
USP40-204ENST00000427947 PIGFQ07326 219 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 ZNF844Q08AG5 666 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 SEMA5AQ13591 1074 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 HABP2Q14520 560 aaPredicted RBP5.17□□□□□ -1.58
USP40-204ENST00000427947 POLD3Q15054 466 aaPredicted RBP5.17□□□□□ -1.58
USP40-204ENST00000427947 SAFBQ15424 915 aaKnown RBP eCLIP5.17□□□□□ -1.58
USP40-204ENST00000427947 COBLL1Q53SF7 1204 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 FOXR2Q6PJQ5 311 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.17□□□□□ -1.58
USP40-204ENST00000427947 SPRED1Q7Z699 444 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 NSUN7Q8NE18 718 aaKnown RBP5.17□□□□□ -1.58
USP40-204ENST00000427947 SLC25A43Q8WUT9 341 aaPredicted RBP5.17□□□□□ -1.58
USP40-204ENST00000427947 VKORC1Q9BQB6 163 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 KRTAP9-9Q9BYP9 154 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 KRTAP9-4Q9BYQ2 154 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 SIK2Q9H0K1 926 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 AKIP1Q9NQ31 210 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 RNF181Q9P0P0 153 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.17□□□□□ -1.58
USP40-204ENST00000427947 SRRDQ9UH36 339 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 AGAP1Q9UPQ3 857 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 MAP3K2Q9Y2U5 619 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 MTO1Q9Y2Z2 717 aaKnown RBP5.17□□□□□ -1.58
USP40-204ENST00000427947 FPGT-TNNI3KV9GXZ4 949 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 NCANO14594 1321 aa5.17□□□□□ -1.58
USP40-204ENST00000427947 SPATA31D1Q6ZQQ2 1576 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 GAGE12BA1L429 117 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 GAGE12HA6NDE8 117 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 C1QTNF3-AMACRE9PGA6 284 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms