RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 TIFAQ96CG3 184 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 BORCS6Q96GS4 357 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 CRACR2AQ9BSW2 395 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 C11orf84Q9BUA3 381 aaPredicted RBP9.1□□□□□ -0.95
TRIM48-201ENST00000417545 LSM14BQ9BX40 385 aaKnown RBP9.1□□□□□ -0.95
TRIM48-201ENST00000417545 PBX4Q9BYU1 374 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 INTS2Q9H0H0 1204 aaKnown RBP9.1□□□□□ -0.95
TRIM48-201ENST00000417545 CWH43Q9H720 699 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 HCSTQ9UBK5 93 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 CACNG4Q9UBN1 327 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 STK39Q9UEW8 545 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 PUF60Q9UHX1 559 aaKnown RBP9.1□□□□□ -0.95
TRIM48-201ENST00000417545 ADAM28Q9UKQ2 775 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 COLQQ9Y215 455 aaPredicted RBP9.1□□□□□ -0.95
TRIM48-201ENST00000417545 GTPBP10A4D1E9 387 aaKnown RBP9.09□□□□□ -0.95
TRIM48-201ENST00000417545 GOLGA6L6A8MZA4 724 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 KPNA7A9QM74 516 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 KIF4AO95239 1232 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 URODP06132 367 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 GALTP07902 379 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 PBX2P40425 430 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 NOP14P78316 857 aaKnown RBP9.09□□□□□ -0.95
TRIM48-201ENST00000417545 CLDN10P78369 228 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 SMAD3P84022 425 aaKnown RBP9.09□□□□□ -0.95
TRIM48-201ENST00000417545 ZBTB6Q15916 424 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 UPP1Q16831 310 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 C1orf220Q5T0J3 134 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 FUT10Q6P4F1 479 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 CACNA2D4Q7Z3S7 1137 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 PPM1KQ8N3J5 372 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 APPL2Q8NEU8 664 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 FAM81BQ96LP2 452 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 PI4K2AQ9BTU6 479 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 SNX25Q9H3E2 840 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 RC3H2Q9HBD1 1191 aaKnown RBP9.09□□□□□ -0.95
TRIM48-201ENST00000417545 SNX9Q9Y5X1 595 aa9.09□□□□□ -0.95
TRIM48-201ENST00000417545 A0A1B0GTH6 734 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 ANO9A1A5B4 782 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 TMEM189-UBE2V1I3L0A0 370 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 PIRO00625 290 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 CYB561D2O14569 222 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 PPEF2O14830 753 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 FGF18O76093 207 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 TBXAS1P24557 533 aaPredicted RBP9.08□□□□□ -0.96
TRIM48-201ENST00000417545 BMPR1AP36894 532 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 BRCC3P46736 316 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 MFAP3P55082 362 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 LILRA4P59901 499 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 SYCP1Q15431 976 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 NAB2Q15742 525 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 MIIPQ5JXC2 388 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 FAM171A1Q5VUB5 890 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 THEM5Q8N1Q8 247 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 SLC39A11Q8N1S5 342 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 EHBP1Q8NDI1 1231 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 ARNTL2Q8WYA1 636 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 IGSF21Q96ID5 467 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 SENP8Q96LD8 212 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 PAAF1Q9BRP4 392 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 C17orf80Q9BSJ5 609 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 PLVAPQ9BX97 442 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 XPO4Q9C0E2 1151 aaKnown RBP9.08□□□□□ -0.96
TRIM48-201ENST00000417545 NIF3L1Q9GZT8 377 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 HSD3B7Q9H2F3 369 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 CERS4Q9HA82 394 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 ENTPD7Q9NQZ7 604 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 SIX4Q9UIU6 781 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 DSEQ9UL01 958 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 YBX2Q9Y2T7 364 aaKnown RBP9.08□□□□□ -0.96
TRIM48-201ENST00000417545 PDE4DIPQ5VU43 2346 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 SCN1AP35498 2009 aa9.08□□□□□ -0.96
TRIM48-201ENST00000417545 H7C4K7 107 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 I3L4J1 428 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 PMM2O15305 246 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 B4GALT3O60512 393 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 VNN1O95497 513 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 ASS1P00966 412 aaKnown RBP9.07□□□□□ -0.96
TRIM48-201ENST00000417545 CST3P01034 146 aaPredicted RBP9.07□□□□□ -0.96
TRIM48-201ENST00000417545 RB1P06400 928 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 CD58P19256 250 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 SLC9A1P19634 815 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 USP8P40818 1118 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 GLUD2P49448 558 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 GPM6BQ13491 265 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 RAPGEF1Q13905 1077 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 GSE1Q14687 1217 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 USP41Q3LFD5 358 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 EPC2Q52LR7 807 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 SPOPLQ6IQ16 392 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 PDXDC1Q6P996 788 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 TRIM65Q6PJ69 517 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.07□□□□□ -0.96
TRIM48-201ENST00000417545 C15orf39Q6ZRI6 1047 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 PPFIBP1Q86W92 1011 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 ADGRF2Q8IZF7 708 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 TMEM130Q8N3G9 435 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 TTC39CQ8N584 583 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 KLHL23Q8NBE8 558 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 OR6B3Q8NGW1 331 aa9.07□□□□□ -0.96
TRIM48-201ENST00000417545 MICAL1Q8TDZ2 1067 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms