RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 MRGPRX1Q96LB2 322 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 C1orf43Q9BWL3 253 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 MRPL46Q9H2W6 279 aaKnown RBP5.68□□□□□ -1.5
VPS54-204ENST00000416400 SIDT1Q9NXL6 827 aaKnown RBP5.68□□□□□ -1.5
VPS54-204ENST00000416400 JAG2Q9Y219 1238 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 USP19O94966 1318 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 ATRNL1Q5VV63 1379 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 TBKBP1A7MCY6 615 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 F5H423 210 aaPredicted RBP5.67□□□□□ -1.5
VPS54-204ENST00000416400 WNT10BO00744 389 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 TBX3O15119 743 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 PJA2O43164 708 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 GNAI3P08754 354 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 ZNF20P17024 532 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 ATP5JP18859 108 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 TNFSF4P23510 183 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 TRAPPC10P48553 1259 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 SOX8P57073 446 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 CLRN1P58418 232 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 RAP2BP61225 183 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 GNAI1P63096 354 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 CNGA2Q16280 664 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 PABPC1LQ4VXU2 614 aaKnown RBP5.67□□□□□ -1.5
VPS54-204ENST00000416400 C4orf46Q504U0 113 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 DCAF17Q5H9S7 520 aaPredicted RBP5.67□□□□□ -1.5
VPS54-204ENST00000416400 METTL24Q5JXM2 366 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 MFSD14BQ5SR56 506 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 Q6ZSN1 163 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 SKAP1Q86WV1 359 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 MYLK4Q86YV6 388 aaPredicted RBP5.67□□□□□ -1.5
VPS54-204ENST00000416400 TNPO1Q92973 898 aaKnown RBP5.67□□□□□ -1.5
VPS54-204ENST00000416400 CEP95Q96GE4 821 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 WWC2-AS2Q96NR7 200 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 UNKQ9C0B0 810 aaKnown RBP5.67□□□□□ -1.5
VPS54-204ENST00000416400 ARFGAP3Q9NP61 516 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 STARD7Q9NQZ5 370 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 PADI4Q9UM07 663 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 TESMINQ9Y4I5 508 aa5.67□□□□□ -1.5
VPS54-204ENST00000416400 PRRG2O14669 202 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 GRM6O15303 877 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 RECQL4O94761 1208 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 AHSGP02765 367 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 MTHFD1P11586 935 aaKnown RBP5.66□□□□□ -1.5
VPS54-204ENST00000416400 EN2P19622 333 aaPredicted RBP5.66□□□□□ -1.5
VPS54-204ENST00000416400 ACRV1P26436 265 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 STT3AP46977 705 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 KCNJ5P48544 419 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 SUMO3P55854 103 aaPredicted RBP5.66□□□□□ -1.5
VPS54-204ENST00000416400 ZNF543Q08ER8 600 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 KRT72Q14CN4 511 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 NRN1LQ496H8 165 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 DACT2Q5SW24 774 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 ATXN7L2Q5T6C5 722 aaPredicted RBP5.66□□□□□ -1.5
VPS54-204ENST00000416400 ANO1Q5XXA6 986 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 SPTY2D1Q68D10 685 aaPredicted RBP5.66□□□□□ -1.5
VPS54-204ENST00000416400 OTUD7BQ6GQQ9 843 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 ERAP2Q6P179 960 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 SEM1Q6ZVN7 128 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 POF1BQ8WVV4 589 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 ZC3H10Q96K80 434 aaKnown RBP5.66□□□□□ -1.5
VPS54-204ENST00000416400 MNTQ99583 582 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 MRI1Q9BV20 369 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 PACSIN1Q9BY11 444 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 CERS4Q9HA82 394 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 PPCSQ9HAB8 311 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 SLAMF7Q9NQ25 335 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 TRMT13Q9NUP7 481 aaKnown RBP5.66□□□□□ -1.5
VPS54-204ENST00000416400 GPRC5BQ9NZH0 403 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.66□□□□□ -1.5
VPS54-204ENST00000416400 CPNE7Q9UBL6 633 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 EIF2B4Q9UI10 523 aaKnown RBP5.66□□□□□ -1.5
VPS54-204ENST00000416400 ZDHHC8Q9ULC8 765 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 TSC22D4Q9Y3Q8 395 aa5.66□□□□□ -1.5
VPS54-204ENST00000416400 POM121BA6NF01 834 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 CXorf49A8MYA2 514 aaPredicted RBP5.65□□□□□ -1.5
VPS54-204ENST00000416400 KIAA0391O15091 583 aaKnown RBP5.65□□□□□ -1.5
VPS54-204ENST00000416400 NCK2O43639 380 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 MATN4O95460 622 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 POMCP01189 267 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 ADRB1P08588 477 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 ALAS1P13196 640 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 FMO1Q01740 532 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 EXOSC9Q06265 439 aaKnown RBP5.65□□□□□ -1.5
VPS54-204ENST00000416400 DAG1Q14118 895 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 RRP1BQ14684 758 aaKnown RBP5.65□□□□□ -1.5
VPS54-204ENST00000416400 BMT2Q1RMZ1 405 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 CCDC93Q567U6 631 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 DGKKQ5KSL6 1271 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 EMC10Q5UCC4 262 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 IZUMO3Q5VZ72 239 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 SESTD1Q86VW0 696 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 LIX1LQ8IVB5 337 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 C1orf210Q8IVY1 113 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 CCDC33Q8N5R6 958 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 OR6B3Q8NGW1 331 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 KBTBD7Q8WVZ9 684 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 P2RX7Q99572 595 aaKnown RBP5.65□□□□□ -1.5
VPS54-204ENST00000416400 LSM14BQ9BX40 385 aaKnown RBP5.65□□□□□ -1.5
VPS54-204ENST00000416400 C1QTNF3Q9BXJ4 246 aa5.65□□□□□ -1.5
VPS54-204ENST00000416400 TRIM54Q9BYV2 358 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms