RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 EPC2Q52LR7 807 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 LRRC55Q6ZSA7 311 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 SYDE1Q6ZW31 735 aaPredicted RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 PRUNE1Q86TP1 453 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 SLC20A1Q8WUM9 679 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 ERLEC1Q96DZ1 483 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 OXNAD1Q96HP4 312 aaPredicted RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 HES6Q96HZ4 224 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 MRPL47Q9HD33 250 aaKnown RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 SLC37A4O43826 429 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 GYS1P13807 737 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 IL2RBP14784 551 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 RAG1P15918 1043 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 ATICP31939 592 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 UBXN2AP68543 259 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 STX3Q13277 289 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 PLEKHA7Q6IQ23 1121 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 CHADLQ6NUI6 762 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 PCGF5Q86SE9 256 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 RNF169Q8NCN4 708 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 SCFD1Q8WVM8 642 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 E2F7Q96AV8 911 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 ALKBH8Q96BT7 664 aaKnown RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 CCDC134Q9H6E4 229 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 GID8Q9NWU2 228 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 ZNF229Q9UJW7 825 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 ATP11BQ9Y2G3 1177 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 HEG1Q9ULI3 1381 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 TRIM43BA6NCK2 446 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 C2orf71A6NGG8 1288 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 NKRFO15226 690 aaKnown RBP eCLIP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 EDF1O60869 148 aaKnown RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 DGKIO75912 1065 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 HSPA4LO95757 839 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 ARL1P40616 181 aaPredicted RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 DRG2P55039 364 aaKnown RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 NAA20P61599 178 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 OCRLQ01968 901 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 ZC2HC1CQ53FD0 456 aaPredicted RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 DARS2Q6PI48 645 aaKnown RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 DPP8Q6V1X1 898 aaPredicted RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 RBM12BQ8IXT5 1001 aaKnown RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 NUDT12Q9BQG2 462 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 REEP2Q9BRK0 252 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 TIPINQ9BVW5 301 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 GLT8D2Q9H1C3 349 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 UNC45AQ9H3U1 944 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 CHST7Q9NS84 486 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 UTP6Q9NYH9 597 aaKnown RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 RRN3Q9NYV6 651 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 TAS2R14Q9NYV8 317 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 TAGLN3Q9UI15 199 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 RBMX2Q9Y388 322 aaKnown RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 TACC3Q9Y6A5 838 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 ADCY6O43306 1168 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 MST1RQ04912 1400 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 FSCBQ5H9T9 825 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 LMBRD2Q68DH5 695 aaPredicted RBP9.79□□□□□ -0.84
COL28A1-201ENST00000399429 SCYL2Q6P3W7 929 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 RHOT1Q8IXI2 618 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 EFCAB3Q8N7B9 438 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 KCNK16Q96T55 309 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 DNAJC18Q9H819 358 aa9.79□□□□□ -0.84
COL28A1-201ENST00000399429 RPTORQ8N122 1335 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 FAM237BA0A1B0GVD1 139 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 KRT38O76015 456 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 FOXN2P32314 431 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 NCKAP1LP55160 1127 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 KCNQ4P56696 695 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 CDK16Q00536 496 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 PDK4Q16654 411 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 HADHQ16836 314 aaKnown RBP9.78□□□□□ -0.84
COL28A1-201ENST00000399429 CATSPER1Q8NEC5 780 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 CYLDQ9NQC7 956 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 SELENONQ9NZV5 590 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 PACSIN3Q9UKS6 424 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 USP20Q9Y2K6 914 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 DLC1Q96QB1 1528 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 RBAK-RBAKDNI3L0D1 243 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 GPC4O75487 556 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 FAM58BPP0C7Q3 252 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 CCDC166P0CW27 439 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 AKR1B1P15121 316 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 PSMC3P17980 439 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 CCDC15Q0P6D6 951 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 FLOT2Q14254 428 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 IRF2BP2Q7Z5L9 587 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 CPA5Q8WXQ8 436 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 VTI1AQ96AJ9 217 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 SCYL1Q96KG9 808 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 PRKAG3Q9UGI9 489 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 STRIP2Q9ULQ0 834 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 PCDHB4Q9Y5E5 795 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 ZCCHC11Q5TAX3 1644 aaKnown RBP9.78□□□□□ -0.84
COL28A1-201ENST00000399429 WDR46O15213 610 aaKnown RBP9.78□□□□□ -0.84
COL28A1-201ENST00000399429 TLR3O15455 904 aaKnown RBP9.78□□□□□ -0.84
COL28A1-201ENST00000399429 TNFAIP8O95379 198 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 SLC25A3Q00325 362 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 MYBPC3Q14896 1274 aa9.78□□□□□ -0.84
COL28A1-201ENST00000399429 CLVS1Q8IUQ0 354 aaPredicted RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms