RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 CYP7A1P22680 504 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 THOP1P52888 689 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 SIK1P57059 783 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 PDE1BQ01064 536 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 RASGRF1Q13972 1273 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 KRT31Q15323 416 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 ZNF174Q15697 407 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 TRAPPC3LQ5T215 181 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 TPGS2Q68CL5 300 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 SHQ1Q6PI26 577 aaKnown RBP6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 ZNF704Q6ZNC4 412 aaPredicted RBP6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 CMTR1Q8N1G2 835 aaKnown RBP6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 ARHGAP18Q8N392 663 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 RFWD2Q8NHY2 731 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 CMTM3Q96MX0 182 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 UCN2Q96RP3 112 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 COQ7Q99807 217 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 CCSER1Q9C0I3 900 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 VPS16Q9H269 839 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 TNKS2Q9H2K2 1166 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 PREBQ9HCU5 417 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 ABHD10Q9NUJ1 306 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 NKIRAS2Q9NYR9 191 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 PCDHGB7Q9Y5F8 929 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 DUOX1Q9NRD9 1551 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 KCNJ18B7U540 433 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 UBE2Q2LH0YL09 131 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 H7C1D1 291 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 KRT86O43790 486 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 GRIN3BO60391 1043 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 CNOT4O95628 575 aaKnown RBP6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 THEGLP0DJG4 465 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 CKBP12277 381 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 XPAP23025 273 aaPredicted RBP6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 CYLC1P35663 651 aaPredicted RBP6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 PBX1P40424 430 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 SERPINB8P50452 374 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 NLRP5P59047 1200 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 SSTP61278 116 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 KCNJ12Q14500 433 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 DSC3Q14574 896 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 CASP8Q14790 479 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 ANO4Q32M45 955 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 FUT11Q495W5 492 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 SLC45A4Q5BKX6 768 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 DRICH1Q6PGQ1 229 aaPredicted RBP6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 USP49Q70CQ1 688 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 NRSN1Q8IZ57 195 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 NELFBQ8WX92 580 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 RAPGEF5Q92565 580 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 SLF1Q9BQI6 1058 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 NDEL1Q9GZM8 345 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 KIAA1683Q9H0B3 1180 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 C12orf10Q9HB07 376 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 CCDC177Q9NQR7 707 aaPredicted RBP6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.97□□□□□ -1.292e-6■■■■■ 39.6
TM9SF4-202ENST00000398022 V9GY48 417 aaPredicted RBP6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 ZNF536O15090 1300 aa6.97□□□□□ -1.29
TM9SF4-202ENST00000398022 MAGEB6P1A0A0J9YX57 407 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 OR5K4A6NMS3 321 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 VSTM5A8MXK1 200 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 ZC3H11AO75152 810 aaKnown RBP eCLIP6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 ECDO95905 644 aaPredicted RBP6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 GYPCP04921 128 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 HEXBP07686 556 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 CFL1P23528 166 aaKnown RBP6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 CALML3P27482 149 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 AXLP30530 894 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 HADHBP55084 474 aaKnown RBP6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 PURAQ00577 322 aaKnown RBP6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 E2F2Q14209 437 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 ERFEQ4G0M1 354 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 SH3RF1Q7Z6J0 888 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 LCORLQ8N3X6 602 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 PCSK9Q8NBP7 692 aaKnown RBP6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 GFM2Q969S9 779 aaKnown RBP6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 FAM20AQ96MK3 541 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 ELAC2Q9BQ52 826 aaKnown RBP6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 ANKZF1Q9H8Y5 726 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 METTL5Q9NRN9 209 aaKnown RBP6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 TAB2Q9NYJ8 693 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 GUCA1BQ9UMX6 200 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 MED16Q9Y2X0 877 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 TELO2Q9Y4R8 837 aa6.96□□□□□ -1.29
TM9SF4-202ENST00000398022 CCDC85CA6NKD9 419 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 ERVV-1B6SEH8 477 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 PPP1R3GB7ZBB8 358 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 PSMA7O14818 248 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 SPTLC1O15269 473 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 ST8SIA5O15466 376 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 NCK2O43639 380 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 IDH3BO43837 385 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 GUCY1B2O75343 617 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 SMNDC1O75940 238 aaKnown RBP eCLIP6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 DDAH1O94760 285 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 CD4P01730 458 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 HLA-DRAP01903 254 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 STAT6P42226 847 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 GNAQP50148 359 aa6.96□□□□□ -1.3
TM9SF4-202ENST00000398022 MTTPP55157 894 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms