RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 PCDH8O95206 1070 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 EYA4O95677 639 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 NCAM1P13591 858 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 VCAM1P19320 739 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 TNNI3P19429 210 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 ATP6V1C1P21283 382 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 GTF2E2P29084 291 aaKnown RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 GRM4Q14833 912 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 VSTM4Q8IW00 320 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 SPIRE2Q8WWL2 714 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 CLMNQ96JQ2 1002 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 TIPINQ9BVW5 301 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 FOXP3Q9BZS1 431 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 WNT8AQ9H1J5 351 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 ADNPQ9H2P0 1102 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 NMRK2Q9NPI5 230 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 RAB6BQ9NRW1 208 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 UTP6Q9NYH9 597 aaKnown RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 STOML1Q9UBI4 398 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 PLAAQ9Y263 795 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 C17orf102A2RUQ5 167 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 PDZK1P1A8MUH7 402 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 LGALS16A8MUM7 142 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 ZC3H11AO75152 810 aaKnown RBP eCLIP7.53□□□□□ -1.2
UPF2-203ENST00000397053 ATP5HO75947 161 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 EGFRP00533 1210 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 FYNP06241 537 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 LRRC23Q53EV4 343 aaPredicted RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 EFCAB12Q6NXP0 572 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 SARM1Q6SZW1 724 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 VN1R5Q7Z5H4 357 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 PRUNE1Q86TP1 453 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 C11orf74Q86VG3 221 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 ENAHQ8N8S7 591 aaPredicted RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 DDI1Q8WTU0 396 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 HSPBP1Q9NZL4 362 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 VPS9D1Q9Y2B5 631 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 FAM135BQ49AJ0 1406 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 TRIM49BA6NDI0 452 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 GPR182O15218 404 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 KCNQ2O43526 872 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 GRAP2O75791 330 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 EPHB2P29323 1055 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 TAF6P49848 677 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 KPNA1P52294 538 aaPredicted RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 ALDH18A1P54886 795 aaKnown RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 RPL10AP62906 217 aaKnown RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 CNTN1Q12860 1018 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 CCDC142Q17RM4 750 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 ATF7IP2Q5U623 682 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 KRT77Q7Z794 578 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 CDR2LQ86X02 465 aaPredicted RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 CNPY4Q8N129 248 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 OSBPL6Q9BZF3 934 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 SPATS2LQ9NUQ6 558 aaKnown RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 LIMA1Q9UHB6 759 aaKnown RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 A0A1B0GW55 424 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 CYP26A1O43174 497 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 MFAP3LO75121 409 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 ENTPD3O75355 529 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 WBP4O75554 376 aaKnown RBP7.52□□□□□ -1.2
UPF2-203ENST00000397053 RHOBTB1O94844 696 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 SEC31AO94979 1220 aaKnown RBP7.52□□□□□ -1.2
UPF2-203ENST00000397053 NDUFB10O96000 172 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 KRT16P08779 473 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 DUX4L2P0CJ85 424 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 DUX4L3P0CJ86 424 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 DUX4L4P0CJ87 422 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 DUX4L5P0CJ88 424 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 DUX4L6P0CJ89 424 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 DUX4L7P0CJ90 424 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 VEGFAP15692 232 aaPredicted RBP7.52□□□□□ -1.2
UPF2-203ENST00000397053 DNAJB2P25686 324 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 RFC5P40937 340 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 CUL3Q13618 768 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 PDK1Q15118 436 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 EFHC1Q5JVL4 640 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 LVRNQ6Q4G3 990 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 RD3Q7Z3Z2 195 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 DEFB128Q7Z7B8 93 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 SLC44A2Q8IWA5 706 aaPredicted RBP7.52□□□□□ -1.2
UPF2-203ENST00000397053 CLEC4FQ8N1N0 589 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 GUF1Q8N442 669 aaKnown RBP7.52□□□□□ -1.2
UPF2-203ENST00000397053 LRRC71Q8N4P6 559 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 SLC16A10Q8TF71 515 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.52□□□□□ -1.2
UPF2-203ENST00000397053 C1orf54Q8WWF1 131 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 SPACA7Q96KW9 195 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 EMILIN2Q9BXX0 1053 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 OXCT2Q9BYC2 517 aaPredicted RBP7.52□□□□□ -1.2
UPF2-203ENST00000397053 STK33Q9BYT3 514 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 WWP1Q9H0M0 922 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 PAPOLBQ9NRJ5 636 aaKnown RBP7.52□□□□□ -1.2
UPF2-203ENST00000397053 RIC8BQ9NVN3 520 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 BARHL2Q9NY43 387 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 WWOXQ9NZC7 414 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 DUX4Q9UBX2 424 aa7.52□□□□□ -1.2
UPF2-203ENST00000397053 LRRC14BA6NHZ5 514 aa7.52□□□□□ -1.21
UPF2-203ENST00000397053 ATP8B1O43520 1251 aa7.52□□□□□ -1.21
UPF2-203ENST00000397053 ODC1P11926 461 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms