RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 HIPK4Q8NE63 616 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 GRAMD1AQ96CP6 724 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 OSBPL1AQ9BXW6 950 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 MTFR1LQ9H019 292 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 NGRNQ9NPE2 291 aaKnown RBP17.05■□□□□ 0.32
PCDH1-203ENST00000394536 MARCOQ9UEW3 520 aaPredicted RBP17.05■□□□□ 0.32
PCDH1-203ENST00000394536 MAGED2Q9UNF1 606 aaPredicted RBP17.05■□□□□ 0.32
PCDH1-203ENST00000394536 SRRM3A6NNA2 597 aaPredicted RBP17.05■□□□□ 0.32
PCDH1-203ENST00000394536 DNAJC8O75937 253 aaPredicted RBP17.05■□□□□ 0.32
PCDH1-203ENST00000394536 GTF2H1P32780 548 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 CPA2P48052 419 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 DGKZQ13574 1117 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 ART4Q93070 314 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 IDI2Q9BXS1 227 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 CHMP2BQ9UQN3 213 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 MYH3P11055 1940 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 ATP9AO75110 1047 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 LUC7L3O95232 432 aaKnown RBP17.04■□□□□ 0.32
PCDH1-203ENST00000394536 GSTA1P08263 222 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 BRD2P25440 801 aaKnown RBP17.04■□□□□ 0.32
PCDH1-203ENST00000394536 ARFIP2P53365 341 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 PSMC1P62191 440 aaKnown RBP17.04■□□□□ 0.32
PCDH1-203ENST00000394536 PKN2Q16513 984 aaKnown RBP17.04■□□□□ 0.32
PCDH1-203ENST00000394536 TTC25Q96NG3 672 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 COL18A1P39060 1754 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 CST8O60676 142 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 HAUS5O94927 633 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 CBX6O95503 412 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 PTGIRP43119 386 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 ORC1Q13415 861 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 PPP6R3Q5H9R7 873 aaPredicted RBP17.04■□□□□ 0.32
PCDH1-203ENST00000394536 SYDE1Q6ZW31 735 aaPredicted RBP17.04■□□□□ 0.32
PCDH1-203ENST00000394536 ARHGAP24Q8N264 748 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 KCTD17Q8N5Z5 321 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 FEZF2Q8TBJ5 459 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 FAM151AQ8WW52 585 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 ZBTB45Q96K62 511 aaPredicted RBP17.04■□□□□ 0.32
PCDH1-203ENST00000394536 VCXQ9H320 206 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 RPAP3Q9H6T3 665 aaPredicted RBP17.04■□□□□ 0.32
PCDH1-203ENST00000394536 DNPEPQ9ULA0 475 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 CHD4Q14839 1912 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 SYNJ2BP-COX16A0A087WUM0 186 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 PROSCO94903 275 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 KRT16P08779 473 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 JAG1P78504 1218 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 TMPRSS15P98073 1019 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 NR1H3Q13133 447 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 TEX2Q8IWB9 1127 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 SHC3Q92529 594 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 COX16Q9P0S2 106 aa17.04■□□□□ 0.32
PCDH1-203ENST00000394536 PRKCEQ02156 737 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 CYP24A1Q07973 514 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 XRCC4Q13426 336 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 CFAP157Q5JU67 520 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 OR6B2Q6IFH4 312 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 C6orf89Q6UWU4 347 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 ZBTB8OSQ8IWT0 167 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.03■□□□□ 0.32
PCDH1-203ENST00000394536 FAF2Q96CS3 445 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 LPXNO60711 386 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 DGAT1O75907 488 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 PECAM1P16284 738 aaPredicted RBP17.03■□□□□ 0.32
PCDH1-203ENST00000394536 SPOCK2Q92563 424 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 RXFP1Q9HBX9 757 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 AGO4Q9HCK5 861 aaKnown RBP17.03■□□□□ 0.32
PCDH1-203ENST00000394536 SSTR1P30872 391 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 UGCGQ16739 394 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 MFSD7Q6UXD7 560 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 SIAH1Q8IUQ4 282 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 DAW1Q8N136 415 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 SYTL5Q8TDW5 730 aaPredicted RBP17.03■□□□□ 0.32
PCDH1-203ENST00000394536 MAGEB18Q96M61 343 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 JPH1Q9HDC5 661 aaPredicted RBP17.03■□□□□ 0.32
PCDH1-203ENST00000394536 NRBP2Q9NSY0 501 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 KCNG1Q9UIX4 513 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 ADAMTS7Q9UKP4 1686 aa17.03■□□□□ 0.32
PCDH1-203ENST00000394536 RGL2O15211 777 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 BANF1O75531 89 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 PSMC4P43686 418 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 SARNPP82979 210 aaKnown RBP17.02■□□□□ 0.32
PCDH1-203ENST00000394536 ATP11CQ8NB49 1132 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 NSUN6Q8TEA1 469 aaKnown RBP17.02■□□□□ 0.32
PCDH1-203ENST00000394536 ATG4CQ96DT6 458 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 MOV10L1Q9BXT6 1211 aaKnown RBP17.02■□□□□ 0.32
PCDH1-203ENST00000394536 TOM1L1O75674 476 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 ICAM1P05362 532 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 POLE2P56282 527 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 EAPPQ56P03 285 aaPredicted RBP17.02■□□□□ 0.32
PCDH1-203ENST00000394536 FAM182AQ5T1J6 154 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 SLFN12LQ6IEE8 588 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 GPAT2Q6NUI2 795 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 C1orf228Q6PIY5 440 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 RCOR2Q8IZ40 523 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 KIAA1586Q9HCI6 787 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 SLIT2O94813 1529 aa17.02■□□□□ 0.32
PCDH1-203ENST00000394536 COPEO14579 308 aa17.02■□□□□ 0.31
PCDH1-203ENST00000394536 ATP5HO75947 161 aa17.02■□□□□ 0.31
PCDH1-203ENST00000394536 KRT3P12035 628 aa17.02■□□□□ 0.31
PCDH1-203ENST00000394536 ZNF699Q32M78 642 aa17.02■□□□□ 0.31
PCDH1-203ENST00000394536 MTDHQ86UE4 582 aaKnown RBP17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms