RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ZFYVE27Q5T4F4 411 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 NLRP14Q86W24 1093 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 CCDC25Q86WR0 208 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 CCDC50Q8IVM0 306 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 MCOLN2Q8IZK6 566 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 NME8Q8N427 588 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 GRK7Q8WTQ7 553 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 CPA5Q8WXQ8 436 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 DDX1Q92499 740 aaKnown RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 CD101Q93033 1021 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 CDCA5Q96FF9 252 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 FAM129AQ9BZQ8 928 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 SPATC1LQ9H0A9 340 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 PORCNQ9H237 461 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 AZI2Q9H6S1 392 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 CNOT10Q9H9A5 744 aaKnown RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 MRPL47Q9HD33 250 aaKnown RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 ZDHHC18Q9NUE0 388 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 ASIC3Q9UHC3 531 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 DOCK1Q14185 1865 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 RGS16O15492 202 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-204ENST00000392003 CLDN3O15551 220 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 GAS8O95995 478 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 RARAP10276 462 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 TBXAS1P24557 533 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-204ENST00000392003 RFC5P40937 340 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-204ENST00000392003 EZH1Q92800 747 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-204ENST00000392003 TARS2Q9BW92 718 aaKnown RBP10.25□□□□□ -0.77
COL6A3-204ENST00000392003 SUN2Q9UH99 717 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 NAT2P11245 290 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 RPL21P46778 160 aaKnown RBP10.25□□□□□ -0.77
COL6A3-204ENST00000392003 NLRP11P59045 1033 aaKnown RBP10.25□□□□□ -0.77
COL6A3-204ENST00000392003 MKRN3Q13064 507 aaKnown RBP10.25□□□□□ -0.77
COL6A3-204ENST00000392003 CRYMQ14894 314 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 CYP1B1Q16678 543 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 TAS1R3Q7RTX0 852 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 PHLDB2Q86SQ0 1253 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 ZNF473Q8WTR7 871 aaKnown RBP10.25□□□□□ -0.77
COL6A3-204ENST00000392003 CCT8L2Q96SF2 557 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 ADAM22Q9P0K1 906 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 PHIPQ8WWQ0 1821 aa10.25□□□□□ -0.77
COL6A3-204ENST00000392003 SMIM23A6NLE4 172 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 GLRA2P23416 452 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 RRM1P23921 792 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 GNA15P30679 374 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 ICAM3P32942 547 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 KCNJ1P48048 391 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 CUL2Q13617 745 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 BYSLQ13895 437 aaKnown RBP10.24□□□□□ -0.77
COL6A3-204ENST00000392003 NAA25Q14CX7 972 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 LLGL1Q15334 1064 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 C6orf118Q5T5N4 469 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 TMEM270Q6UE05 265 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 TMEM110Q86TL2 294 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 ASAP3Q8TDY4 903 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 ZNF516Q92618 1163 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 ASCC2Q9H1I8 757 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-204ENST00000392003 A0A1B0GVG6 124 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 GMNCA6NCL1 334 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 THAP12O43422 761 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 C4BPAP04003 597 aaKnown RBP10.24□□□□□ -0.77
COL6A3-204ENST00000392003 NUDT17P0C025 328 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 TDRD10Q5VZ19 366 aaKnown RBP10.24□□□□□ -0.77
COL6A3-204ENST00000392003 TTC27Q6P3X3 843 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 LBX2Q6XYB7 198 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 MYCBPAPQ8TBZ2 947 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 C1orf54Q8WWF1 131 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 CCDC114Q96M63 670 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 CGRRF1Q99675 332 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 SELENOSQ9BQE4 189 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 C11orf70Q9BRQ4 267 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 DHX33Q9H6R0 707 aaKnown RBP10.24□□□□□ -0.77
COL6A3-204ENST00000392003 HOMER3Q9NSC5 361 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 TELO2Q9Y4R8 837 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 MAFBQ9Y5Q3 323 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-204ENST00000392003 SCINQ9Y6U3 715 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 CXCL11O14625 94 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 FSCN2O14926 492 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 FAM107AO95990 144 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 CALCAP01258 141 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 PGK2P07205 417 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 UNGP13051 313 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-204ENST00000392003 SEC24CP53992 1094 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 PPARDQ03181 441 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 PDCD2Q16342 344 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-204ENST00000392003 C16orf87Q6PH81 154 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 C15orf39Q6ZRI6 1047 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 FASTKD5Q7L8L6 764 aaKnown RBP10.24□□□□□ -0.77
COL6A3-204ENST00000392003 SPDL1Q96EA4 605 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 CYFIP2Q96F07 1278 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 ZBTB45Q96K62 511 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-204ENST00000392003 FAM84AQ96KN4 292 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 LRRC19Q9H756 370 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 GRHL1Q9NZI5 618 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 BTBD7Q9P203 1132 aa10.24□□□□□ -0.77
COL6A3-204ENST00000392003 MYH9P35579 1960 aaKnown RBP10.23□□□□□ -0.77
COL6A3-204ENST00000392003 FER1L6Q2WGJ9 1857 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 KIAA1217Q5T5P2 1943 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 TCRBV7S2A1N4TA0A589 114 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms