RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 GJC2Q5T442 439 aaPredicted RBP2.98□□□□□ -1.93
VPS13A-206ENST00000376646 MIGA2Q7L4E1 593 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 TFAP2BQ92481 460 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 LPIN2Q92539 896 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 TEKT5Q96M29 485 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 DMRTA2Q96SC8 542 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 VRK1Q99986 396 aaPredicted RBP2.98□□□□□ -1.93
VPS13A-206ENST00000376646 PUS7LQ9H0K6 701 aaKnown RBP2.98□□□□□ -1.93
VPS13A-206ENST00000376646 ADARB2Q9NS39 739 aaKnown RBP2.98□□□□□ -1.93
VPS13A-206ENST00000376646 MRPS18AQ9NVS2 196 aaKnown RBP2.98□□□□□ -1.93
VPS13A-206ENST00000376646 LRIT1Q9P2V4 623 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 COX11Q9Y6N1 276 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 IGLV2-14P01704 120 aa2.97□□□□□ -1.93
VPS13A-206ENST00000376646 ELFN1P0C7U0 828 aa2.97□□□□□ -1.93
VPS13A-206ENST00000376646 LMO1P25800 156 aa2.97□□□□□ -1.93
VPS13A-206ENST00000376646 BLOC1S1P78537 153 aa2.97□□□□□ -1.93
VPS13A-206ENST00000376646 CDC42EP1Q00587 391 aa2.97□□□□□ -1.93
VPS13A-206ENST00000376646 SYDE2Q5VT97 1194 aa2.97□□□□□ -1.93
VPS13A-206ENST00000376646 ZNF384Q8TF68 577 aa2.97□□□□□ -1.93
VPS13A-206ENST00000376646 CLPTM1LQ96KA5 538 aa2.97□□□□□ -1.93
VPS13A-206ENST00000376646 DUSP26Q9BV47 211 aa2.97□□□□□ -1.93
VPS13A-206ENST00000376646 IMPG2Q9BZV3 1241 aa2.97□□□□□ -1.93
VPS13A-206ENST00000376646 SPC25Q9HBM1 224 aa2.97□□□□□ -1.93
VPS13A-206ENST00000376646 CTTNBP2NLQ9P2B4 639 aa2.97□□□□□ -1.93
VPS13A-206ENST00000376646 KLHL33A6NCF5 533 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 YY2O15391 372 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 SUN1O94901 812 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 WASP42768 502 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 PHKA1P46020 1223 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 HNRNPMP52272 730 aaKnown RBP eCLIP2.96□□□□□ -1.93
VPS13A-206ENST00000376646 UAP1L1Q3KQV9 507 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 SYCE2Q6PIF2 218 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 COLGALT2Q8IYK4 626 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 LNX2Q8N448 690 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 PDPRQ8NCN5 879 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 SLC17A8Q8NDX2 589 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 TOR1AIP2Q8NFQ8 470 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 CAGE1Q8TC20 777 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 HDAC10Q969S8 669 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 COA7Q96BR5 231 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 PDLIM2Q96JY6 352 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 MRGPRX4Q96LA9 322 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 SMAD5Q99717 465 aaKnown RBP2.96□□□□□ -1.93
VPS13A-206ENST00000376646 SPATA5L1Q9BVQ7 753 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 SAP30BPQ9UHR5 308 aaKnown RBP2.96□□□□□ -1.93
VPS13A-206ENST00000376646 KAT6AQ92794 2004 aa2.96□□□□□ -1.93
VPS13A-206ENST00000376646 ANKRD62A6NC57 917 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 MYADML2A6NDP7 307 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 VWC2LB2RUY7 222 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 E9PLN8 166 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 PEX1O43933 1283 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 CHRM2P08172 466 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 CDK11BP21127 795 aaKnown RBP2.96□□□□□ -1.94
VPS13A-206ENST00000376646 MAPK10P53779 464 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 AMPD3Q01432 767 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 TLE1Q04724 770 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 PABPC1LQ4VXU2 614 aaKnown RBP2.96□□□□□ -1.94
VPS13A-206ENST00000376646 ZKSCAN2Q63HK3 967 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 SLC30A10Q6XR72 485 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 PEG10Q86TG7 708 aaKnown RBP2.96□□□□□ -1.94
VPS13A-206ENST00000376646 PRPF38AQ8NAV1 312 aaKnown RBP2.96□□□□□ -1.94
VPS13A-206ENST00000376646 VKORC1Q9BQB6 163 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 PACSIN1Q9BY11 444 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 ZBTB32Q9Y2Y4 487 aaPredicted RBP2.96□□□□□ -1.94
VPS13A-206ENST00000376646 TNKSO95271 1327 aa2.96□□□□□ -1.94
VPS13A-206ENST00000376646 TOR1BO14657 336 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 KCNA2P16389 499 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 FPGSQ05932 587 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 GADL1Q6ZQY3 521 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 NECAB2Q7Z6G3 386 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 ADGRG5Q8IZF4 528 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 CFAP52Q8N1V2 620 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 IL17RDQ8NFM7 739 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 NLGN4YQ8NFZ3 816 aaPredicted RBP2.95□□□□□ -1.94
VPS13A-206ENST00000376646 MYCBPAPQ8TBZ2 947 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 FBXL20Q96IG2 436 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 SLAMF7Q9NQ25 335 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 SEMA4GQ9NTN9 838 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 ST3GAL5Q9UNP4 418 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 PRAMEF33A0A0G2JMD5 474 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 ADM5C9JUS6 153 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 PRAMEF10O60809 474 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 SLC43A1O75387 559 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 RHOP08100 348 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 MTHFD1P11586 935 aaKnown RBP2.95□□□□□ -1.94
VPS13A-206ENST00000376646 PPP3CBP16298 524 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 CHRM3P20309 590 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 CD38P28907 300 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 FXR1P51114 621 aaKnown RBP eCLIP2.95□□□□□ -1.94
VPS13A-206ENST00000376646 SLC16A1P53985 500 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 CACNA2D1P54289 1103 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 PROK1P58294 105 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 PSMC1P62191 440 aaKnown RBP2.95□□□□□ -1.94
VPS13A-206ENST00000376646 PTPN21Q16825 1174 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 PREPLQ4J6C6 727 aaPredicted RBP2.95□□□□□ -1.94
VPS13A-206ENST00000376646 KHDC1Q4VXA5 237 aaKnown RBP2.95□□□□□ -1.94
VPS13A-206ENST00000376646 VWA1Q6PCB0 445 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 ZNF365Q70YC5 407 aa2.95□□□□□ -1.94
VPS13A-206ENST00000376646 PNMA8AQ86V59 439 aaPredicted RBP2.95□□□□□ -1.94
VPS13A-206ENST00000376646 MED15Q96RN5 788 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms