RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 AVENQ9NQS1 362 aaPredicted RBP23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 PANK4Q9NVE7 773 aa23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 TIMM13Q9Y5L4 95 aaPredicted RBP23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 PIRO00625 290 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 CUTAO60888 179 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 NPR3P17342 541 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 PTPN2P17706 415 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 TYMPP19971 482 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 PAX3P23760 479 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 CLCN5P51795 746 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 CASP5P51878 434 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 LILRA4P59901 499 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 ALCAMQ13740 583 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 E2F4Q16254 413 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 CWF19L1Q69YN2 538 aaKnown RBP23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 USP37Q86T82 979 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 TNMDQ9H2S6 317 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 INSL5Q9Y5Q6 135 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 ANK1P16157 1881 aa23.53■■□□□ 1.36
CCDC28B-201ENST00000373602 ANO9A1A5B4 782 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 F13A1P00488 732 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 RHOP08100 348 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 CFHP08603 1231 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 CPB1P15086 417 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 ADCY1Q08828 1119 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 PARM1Q6UWI2 310 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 MTSS1LQ765P7 747 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 NPAS3Q8IXF0 933 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 SIX5Q8N196 739 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 FGF14Q92915 247 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 RPP25Q9BUL9 199 aaKnown RBP23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 FGFBP2Q9BYJ0 223 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 CUEDC2Q9H467 287 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 KBTBD4Q9NVX7 518 aa23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 MRPS23Q9Y3D9 190 aaKnown RBP23.52■■□□□ 1.36
CCDC28B-201ENST00000373602 SPTLC1O15269 473 aa23.51■■□□□ 1.35
CCDC28B-201ENST00000373602 SLC5A9Q2M3M2 681 aa23.51■■□□□ 1.35
CCDC28B-201ENST00000373602 SHC4Q6S5L8 630 aa23.51■■□□□ 1.35
CCDC28B-201ENST00000373602 RNF19BQ6ZMZ0 732 aa23.51■■□□□ 1.35
CCDC28B-201ENST00000373602 CCDC65Q8IXS2 484 aa23.51■■□□□ 1.35
CCDC28B-201ENST00000373602 FLCNQ8NFG4 579 aa23.51■■□□□ 1.35
CCDC28B-201ENST00000373602 ST13P5Q8NFI4 369 aaPredicted RBP23.51■■□□□ 1.35
CCDC28B-201ENST00000373602 SENP8Q96LD8 212 aa23.51■■□□□ 1.35
CCDC28B-201ENST00000373602 LRRC27Q9C0I9 530 aa23.51■■□□□ 1.35
CCDC28B-201ENST00000373602 SLC2A4RGQ9NR83 387 aa23.51■■□□□ 1.35
CCDC28B-201ENST00000373602 OR6C75A6NL08 312 aa23.5■■□□□ 1.35
CCDC28B-201ENST00000373602 GALR2O43603 387 aaPredicted RBP23.5■■□□□ 1.35
CCDC28B-201ENST00000373602 IL18RAPO95256 599 aa23.5■■□□□ 1.35
CCDC28B-201ENST00000373602 GARTP22102 1010 aa23.5■■□□□ 1.35
CCDC28B-201ENST00000373602 OVOS1Q6IE37 1185 aa23.5■■□□□ 1.35
CCDC28B-201ENST00000373602 NT5DC4Q86YG4 428 aa23.5■■□□□ 1.35
CCDC28B-201ENST00000373602 DPP3Q9NY33 737 aa23.5■■□□□ 1.35
CCDC28B-201ENST00000373602 GTF3C3Q9Y5Q9 886 aa23.5■■□□□ 1.35
CCDC28B-201ENST00000373602 KRBA1A5PL33 1030 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 ODC1P11926 461 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 AOC1P19801 751 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 GPR17Q13304 367 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 PRSS36Q5K4E3 855 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 ATL3Q6DD88 541 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 ALYREFQ86V81 257 aaKnown RBP23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 EFCAB13Q8IY85 973 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 SYCP3Q8IZU3 236 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 IQUBQ8NA54 791 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 ZSWIM2Q8NEG5 633 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 KCNG4Q8TDN1 519 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 GPR152Q8TDT2 470 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 ING5Q8WYH8 240 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 CORO1BQ9BR76 489 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 FAM213AQ9BRX8 229 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 TRIM9Q9C026 710 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 TMEM206Q9H813 350 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 GDE1Q9NZC3 331 aa23.49■■□□□ 1.35
CCDC28B-201ENST00000373602 PRPF6O94906 941 aaKnown RBP23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 VNN2O95498 520 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 LDHAP00338 332 aaKnown RBP23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 OR4Q2P0C623 313 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 AMPD3Q01432 767 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 TWF1Q12792 350 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 PKP1Q13835 747 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 MYBPC2Q14324 1141 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 FOXD4L6Q3SYB3 417 aaPredicted RBP23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 FOXD4L3Q6VB84 417 aaPredicted RBP23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 BRSK2Q8IWQ3 736 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 ELMOD1Q8N336 334 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 DHX58Q96C10 678 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 SAAL1Q96ER3 474 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 IRF2BPLQ9H1B7 796 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 CEP72Q9P209 647 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 CA14Q9ULX7 337 aa23.48■■□□□ 1.35
CCDC28B-201ENST00000373602 MICAL2O94851 1124 aa23.47■■□□□ 1.35
CCDC28B-201ENST00000373602 CYP11A1P05108 521 aa23.47■■□□□ 1.35
CCDC28B-201ENST00000373602 CEBPBP17676 345 aa23.47■■□□□ 1.35
CCDC28B-201ENST00000373602 TAF6P49848 677 aa23.47■■□□□ 1.35
CCDC28B-201ENST00000373602 CNNM4Q6P4Q7 775 aa23.47■■□□□ 1.35
CCDC28B-201ENST00000373602 POTEHQ6S545 545 aa23.47■■□□□ 1.35
CCDC28B-201ENST00000373602 MCRS1Q96EZ8 462 aa23.47■■□□□ 1.35
CCDC28B-201ENST00000373602 ZNF512Q96ME7 567 aaPredicted RBP23.47■■□□□ 1.35
CCDC28B-201ENST00000373602 RTP3Q9BQQ7 232 aa23.47■■□□□ 1.35
CCDC28B-201ENST00000373602 CBWD1Q9BRT8 395 aa23.47■■□□□ 1.35
CCDC28B-201ENST00000373602 PCDHA7Q9UN72 937 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms