RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 DEAF1O75398 565 aaPredicted RBP19.24■□□□□ 0.67
SHANK1-202ENST00000359082 METTL16Q86W50 562 aaKnown RBP19.24■□□□□ 0.67
SHANK1-202ENST00000359082 ATMINO43313 823 aaPredicted RBP19.24■□□□□ 0.67
SHANK1-202ENST00000359082 GUCA1CO95843 209 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 GSNP06396 782 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 RPS6P62753 249 aaKnown RBP19.24■□□□□ 0.67
SHANK1-202ENST00000359082 EME1Q96AY2 570 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 STK33Q9BYT3 514 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 RANBP17Q9H2T7 1088 aaKnown RBP19.24■□□□□ 0.67
SHANK1-202ENST00000359082 ABCC3O15438 1527 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 TRAPPC3O43617 180 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 TTC39BQ5VTQ0 682 aaPredicted RBP19.24■□□□□ 0.67
SHANK1-202ENST00000359082 UBA3Q8TBC4 463 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 PLEKHA8Q96JA3 519 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 CDHR2Q9BYE9 1310 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 SLC9A1P19634 815 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 GOLGA7BQ2TAP0 167 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 CAB39Q9Y376 341 aaPredicted RBP19.24■□□□□ 0.67
SHANK1-202ENST00000359082 SPATA31A3Q5VYP0 1347 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 KCNV1Q6PIU1 500 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 IPMKQ8NFU5 416 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 CHP1Q99653 195 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 SMAD5Q99717 465 aaKnown RBP19.24■□□□□ 0.67
SHANK1-202ENST00000359082 CAPN10Q9HC96 672 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 C6orf203Q9P0P8 240 aaPredicted RBP19.24■□□□□ 0.67
SHANK1-202ENST00000359082 PLEKHG2Q9H7P9 1386 aa19.24■□□□□ 0.67
SHANK1-202ENST00000359082 TNPO2O14787 897 aaKnown RBP19.23■□□□□ 0.67
SHANK1-202ENST00000359082 PLOD1Q02809 727 aaPredicted RBP19.23■□□□□ 0.67
SHANK1-202ENST00000359082 SNX17Q15036 470 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 PTRHD1Q6GMV3 140 aaKnown RBP19.23■□□□□ 0.67
SHANK1-202ENST00000359082 TEX9Q8N6V9 391 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 CDH2P19022 906 aaPredicted RBP19.23■□□□□ 0.67
SHANK1-202ENST00000359082 TWF1Q12792 350 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 SMTNL2Q2TAL5 461 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 THTPAQ9BU02 230 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 FAM49BQ9NUQ9 324 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 PRR36Q9H6K5 1346 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 SERPINB4P48594 390 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 GALCP54803 685 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 TMED8Q6PL24 325 aaPredicted RBP19.23■□□□□ 0.67
SHANK1-202ENST00000359082 PRRG1O14668 218 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 CYP27B1O15528 508 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 KCNB1Q14721 858 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 HES6Q96HZ4 224 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 C9orf72Q96LT7 481 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 KCNJ6P48051 423 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 FMO5P49326 533 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 SNRNP35Q16560 246 aaKnown RBP19.23■□□□□ 0.67
SHANK1-202ENST00000359082 DNAL1Q4LDG9 190 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 ZRANB3Q5FWF4 1079 aa19.23■□□□□ 0.67
SHANK1-202ENST00000359082 WEE2P0C1S8 567 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 MZF1P28698 734 aaPredicted RBP19.22■□□□□ 0.67
SHANK1-202ENST00000359082 MTM1Q13496 603 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 PIGHQ14442 188 aaPredicted RBP19.22■□□□□ 0.67
SHANK1-202ENST00000359082 MGAT5BQ3V5L5 792 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 BRINP3Q76B58 766 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 VPS50Q96JG6 964 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 C16orf96A6NNT2 1141 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 METTL5Q9NRN9 209 aaKnown RBP19.22■□□□□ 0.67
SHANK1-202ENST00000359082 MORC2Q9Y6X9 1032 aaPredicted RBP19.22■□□□□ 0.67
SHANK1-202ENST00000359082 CPSF1Q10570 1443 aaKnown RBP19.22■□□□□ 0.67
SHANK1-202ENST00000359082 ITIH2P19823 946 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 CSE1LP55060 971 aaKnown RBP19.22■□□□□ 0.67
SHANK1-202ENST00000359082 PLA2G4FQ68DD2 849 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 FAM117BQ6P1L5 589 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 RUBCNQ92622 972 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 KLF6Q99612 283 aaPredicted RBP19.22■□□□□ 0.67
SHANK1-202ENST00000359082 USE1Q9NZ43 259 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 SH3BP1Q9Y3L3 701 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 ARHGAP31Q2M1Z3 1444 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 SERPINB9P50453 376 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 LAYNQ6UX15 382 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 PRPF39Q86UA1 669 aaKnown RBP19.22■□□□□ 0.67
SHANK1-202ENST00000359082 SH3GL3Q99963 347 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 EMC2Q15006 297 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 ALX1Q15699 326 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 SLC18A3Q16572 532 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 SGSM1Q2NKQ1 1148 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 LRIG3Q6UXM1 1119 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 STAMBPL1Q96FJ0 436 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 FAM129AQ9BZQ8 928 aa19.22■□□□□ 0.67
SHANK1-202ENST00000359082 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.22■□□□□ 0.67
SHANK1-202ENST00000359082 KLK7P49862 253 aa19.21■□□□□ 0.67
SHANK1-202ENST00000359082 IYDQ6PHW0 289 aa19.21■□□□□ 0.67
SHANK1-202ENST00000359082 DTNAQ9Y4J8 743 aa19.21■□□□□ 0.67
SHANK1-202ENST00000359082 AVPR1AP37288 418 aa19.21■□□□□ 0.67
SHANK1-202ENST00000359082 BTKQ06187 659 aa19.21■□□□□ 0.67
SHANK1-202ENST00000359082 FMR1Q06787 632 aaKnown RBP eCLIP19.21■□□□□ 0.67
SHANK1-202ENST00000359082 CCDC92Q53HC0 331 aaPredicted RBP19.21■□□□□ 0.67
SHANK1-202ENST00000359082 CENPPQ6IPU0 288 aa19.21■□□□□ 0.67
SHANK1-202ENST00000359082 ZNF512Q96ME7 567 aaPredicted RBP19.21■□□□□ 0.67
SHANK1-202ENST00000359082 CYP4A22Q5TCH4 519 aa19.21■□□□□ 0.67
SHANK1-202ENST00000359082 FAM84BQ96KN1 310 aaPredicted RBP19.21■□□□□ 0.67
SHANK1-202ENST00000359082 TIPINQ9BVW5 301 aa19.21■□□□□ 0.67
SHANK1-202ENST00000359082 FAM205CA6NFA0 338 aa19.21■□□□□ 0.67
SHANK1-202ENST00000359082 DYNC1LI2O43237 492 aaPredicted RBP19.21■□□□□ 0.67
SHANK1-202ENST00000359082 NCALDP61601 193 aa19.21■□□□□ 0.67
SHANK1-202ENST00000359082 FOXO4P98177 505 aa19.21■□□□□ 0.67
SHANK1-202ENST00000359082 ANGPT1Q15389 498 aa19.21■□□□□ 0.67
SHANK1-202ENST00000359082 TMEM154Q6P9G4 183 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms