RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 GRM6O15303 877 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 LPXNO60711 386 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 ASS1P00966 412 aaKnown RBP4.34□□□□□ -1.72
LIG4-201ENST00000356922 AFPP02771 609 aaKnown RBP4.34□□□□□ -1.72
LIG4-201ENST00000356922 RPL17P18621 184 aaKnown RBP4.34□□□□□ -1.72
LIG4-201ENST00000356922 EEF1GP26641 437 aaKnown RBP4.34□□□□□ -1.72
LIG4-201ENST00000356922 LRPAP1P30533 357 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 SSTR3P32745 418 aaPredicted RBP4.34□□□□□ -1.72
LIG4-201ENST00000356922 PPP1R2P41236 205 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 ASPAP45381 313 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 UBASH3AP57075 661 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 UBXN1Q04323 297 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 BIRC3Q13489 604 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 MAN2A1Q16706 1144 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 KRT39Q6A163 491 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 TRIM65Q6PJ69 517 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 LRRTM3Q86VH5 581 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 OSTM1Q86WC4 334 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 ABI1Q8IZP0 508 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 WHAMMQ8TF30 809 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 MRPL45Q9BRJ2 306 aaKnown RBP4.34□□□□□ -1.72
LIG4-201ENST00000356922 TMEM8AQ9HCN3 771 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 TMEM30AQ9NV96 361 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 NXF1Q9UBU9 619 aaKnown RBP4.34□□□□□ -1.72
LIG4-201ENST00000356922 L1RE1Q9UN81 338 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 INSL6Q9Y581 213 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 DOCK6Q96HP0 2047 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 LAMA1P25391 3075 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 PLXNA4Q9HCM2 1894 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 SMTNL1A8MU46 457 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 LGALS16A8MUM7 142 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 HIDE1A8MVS5 230 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 IL18RAPO95256 599 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 ALDH2P05091 517 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 TMEM191BP0C7N4 346 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 DNAJB2P25686 324 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 TKTP29401 623 aaKnown RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 GTF2F1P35269 517 aaKnown RBP eCLIP4.33□□□□□ -1.72
LIG4-201ENST00000356922 MXI1P50539 228 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 GRIK3Q13003 919 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 ZNF394Q53GI3 561 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 PRSS55Q6UWB4 352 aaPredicted RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 SCARA5Q6ZMJ2 495 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 Q7L0L9 218 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 DNAAF5Q86Y56 855 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 C12orf29Q8N999 325 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 EHBP1Q8NDI1 1231 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 PHOSPHO2Q8TCD6 241 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 HPDLQ96IR7 371 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 RPS6KC1Q96S38 1066 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 DPEP3Q9H4B8 488 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 UBQLN1Q9UMX0 589 aaKnown RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 SNX9Q9Y5X1 595 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 KPNA7A9QM74 516 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 FOXN3O00409 490 aaPredicted RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 C2CD2LO14523 706 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 KIAA0391O15091 583 aaKnown RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 SERPINC1P01008 464 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 OR4Q2P0C623 313 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 ACO1P21399 889 aaKnown RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 ACAT1P24752 427 aaKnown RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 AARSP49588 968 aaKnown RBP eCLIP4.33□□□□□ -1.72
LIG4-201ENST00000356922 FXR1P51114 621 aaKnown RBP eCLIP4.33□□□□□ -1.72
LIG4-201ENST00000356922 GSE1Q14687 1217 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 WSCD1Q658N2 575 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 LIMS2Q7Z4I7 341 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 RNF168Q8IYW5 571 aaPredicted RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 COLGALT1Q8NBJ5 622 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 FBXL13Q8NEE6 735 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 OLIG1Q8TAK6 271 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 CPLX3Q8WVH0 158 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 IGSF21Q96ID5 467 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 SLC9A7Q96T83 725 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 NAA15Q9BXJ9 866 aaKnown RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 GTPBP4Q9BZE4 634 aaKnown RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 TTYH3Q9C0H2 523 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 CRISPLD1Q9H336 500 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 GRPEL1Q9HAV7 217 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 METTL14Q9HCE5 456 aaKnown RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 TMLHEQ9NVH6 421 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 GCNT4Q9P109 453 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 FHOD1Q9Y613 1164 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 RALGAPA2Q2PPJ7 1873 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 GOLGA6L19H0YKK7 550 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 FGF18O76093 207 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 VNN2O95498 520 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 GNA14O95837 355 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 PDGFRBP09619 1106 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 SKIP12755 728 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 KRT13P13646 458 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 CD58P19256 250 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 BMPR1AP36894 532 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 HSP90AA2PQ14568 343 aaPredicted RBP4.33□□□□□ -1.72
LIG4-201ENST00000356922 GRIN2CQ14957 1233 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 KLHDC7AQ5VTJ3 777 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 IQCEQ6IPM2 695 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 GLYCTKQ8IVS8 523 aa4.33□□□□□ -1.72
LIG4-201ENST00000356922 SLC39A11Q8N1S5 342 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms