RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 RDM1Q8NG50 284 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 ARL8AQ96BM9 186 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 APPL1Q9UKG1 709 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 CYP26A1O43174 497 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 NCK2O43639 380 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 ENTPD3O75355 529 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 PRR29P0C7W0 189 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 PDGFRAP16234 1089 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.77□□□□□ -1.33
UPF2-201ENST00000356352 KIZQ2M2Z5 673 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 WDR72Q3MJ13 1102 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 PTRHD1Q6GMV3 140 aaKnown RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 NAPEPLDQ6IQ20 393 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 ZNF746Q6NUN9 644 aaPredicted RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 OXER1Q8TDS5 423 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 SEPT1Q8WYJ6 367 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 HES6Q96HZ4 224 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 C7orf25Q9BPX7 421 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 CCSER1Q9C0I3 900 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 PRDM5Q9NQX1 630 aaPredicted RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 DDX28Q9NUL7 540 aaKnown RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 CDY2AQ9Y6F7 541 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 CDY1Q9Y6F8 540 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 SPATA31A3Q5VYP0 1347 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 TTC26A0AVF1 554 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 F5H423 210 aaPredicted RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 AKAP10O43572 662 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 GAS2O43903 313 aaKnown RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 PDHA1P08559 390 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 MAPK1P28482 360 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 MRPS15P82914 257 aaKnown RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 ILF2Q12905 390 aaKnown RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 TERF2Q15554 542 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 SLC18A3Q16572 532 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 TTLL9Q3SXZ7 439 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 WLSQ5T9L3 541 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 DDX42Q86XP3 938 aaKnown RBP eCLIP6.77□□□□□ -1.33
UPF2-201ENST00000356352 DHX40Q8IX18 779 aaKnown RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 CLEC4FQ8N1N0 589 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 MRPL48Q96GC5 212 aaKnown RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 TASP1Q9H6P5 420 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 LATS2Q9NRM7 1088 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 PRMT7Q9NVM4 692 aaPredicted RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 MAP3K4Q9Y6R4 1608 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 A0A087WWV3 80 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 EVPLLA8MZ36 301 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 H7C4K7 107 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 PRRG1O14668 218 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 ALDH1A2O94788 518 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 TOMM70O94826 608 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 MUTP22033 750 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 CPT1AP50416 773 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 SESN2P58004 480 aaPredicted RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 NCOA4Q13772 614 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 EMC2Q15006 297 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 HLFQ16534 295 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 GLB1LQ6UWU2 654 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 FAR2Q96K12 515 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 C17orf80Q9BSJ5 609 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 CNPY3Q9BT09 278 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 NT5C1AQ9BXI3 368 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 SYNDIG1Q9H7V2 258 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 TUBGCP4Q9UGJ1 667 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 TSR3Q9UJK0 312 aaKnown RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 HEATR9A2RTY3 570 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 RPS6KA5O75582 802 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 SOAT2O75908 522 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 TDP2O95551 362 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 EIF2S1P05198 315 aaKnown RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 TRIM49P0CI25 452 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 TRIM49CP0CI26 452 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 MLNP12872 115 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 FDFT1P37268 417 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 EDRF1Q3B7T1 1238 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 CYFIP1Q7L576 1253 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 PGBD3Q8N328 593 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 ATP6V0D2Q8N8Y2 350 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 CHST13Q8NET6 341 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 BTN2A2Q8WVV5 523 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 VPS50Q96JG6 964 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 CRAMP1Q96RY5 1269 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 NYAP2Q9P242 653 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 DTNAQ9Y4J8 743 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 SNX9Q9Y5X1 595 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 A0A1W2PQJ5 194 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 MYO1GB0I1T2 1018 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 MYO1CO00159 1063 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 ANXA9O76027 345 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 FKBP9O95302 570 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 EGFRP00533 1210 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 C4BPBP20851 252 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 GPD1P21695 349 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 CNTN1Q12860 1018 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 CSTF3Q12996 717 aaKnown RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 STRIP1Q5VSL9 837 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 TRIM65Q6PJ69 517 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 FKBP9P1Q75LS8 142 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 RBBP8NLQ8NC74 664 aaPredicted RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 THAP11Q96EK4 314 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 EPN3Q9H201 632 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms