RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TMEM79Q9BSE2 394 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 A0A1W2PP64 1363 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 TMOD1P28289 359 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 SLC45A4Q5BKX6 768 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 ZMYM1Q5SVZ6 1142 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 ARMCX2Q7L311 632 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 PALB2Q86YC2 1186 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 OR8H2Q8N162 312 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 MDM1Q8TC05 714 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 A0A0D9SFI3 127 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 ZCCHC18P0CG32 403 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 CHRNB3Q05901 458 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 NR1I3Q14994 352 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 TNFAIP8L3Q5GJ75 292 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 TTC30BQ8N4P2 665 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 KITP10721 976 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 DNAJC3Q13217 504 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 MYBPC2Q14324 1141 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 KLHL17Q6TDP4 642 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 ERICH1Q86X53 443 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 GALNT4Q8N4A0 578 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 TMEM35BQ8NCS4 154 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 EMILIN3Q9NT22 766 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 VAV3Q9UKW4 847 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 TRAPPC3O43617 180 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 OSBPP22059 807 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 ANGPTL8Q6UXH0 198 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 ERO1BQ86YB8 467 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 ILKAPQ9H0C8 392 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-203ENST00000353578 ZNF532Q9HCE3 1301 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 DLATP10515 647 aaKnown RBP13.17□□□□□ -0.3
COL6A3-203ENST00000353578 COX10Q12887 443 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 HEATR6Q6AI08 1181 aaKnown RBP13.17□□□□□ -0.3
COL6A3-203ENST00000353578 KATNAL1Q9BW62 490 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 ACTL7BQ9Y614 415 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 RTN2O75298 545 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 PRLP01236 227 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 RARGP13631 454 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 TRAF3Q13114 568 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 NR1D2Q14995 579 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 AARS2Q5JTZ9 985 aaKnown RBP13.17□□□□□ -0.3
COL6A3-203ENST00000353578 GIN1Q9NXP7 522 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 AKAP7Q9P0M2 348 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-203ENST00000353578 BAIAP2Q9UQB8 552 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 ZBTB1Q9Y2K1 713 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 A0A1W2PRG6 482 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 LPIN1Q14693 890 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 NARS2Q96I59 477 aaKnown RBP13.17□□□□□ -0.3
COL6A3-203ENST00000353578 PTTG2Q9NZH5 202 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 C15orf38-AP3S2A0A0A6YYH1 394 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 TRAP1Q12931 704 aaKnown RBP13.17□□□□□ -0.3
COL6A3-203ENST00000353578 ARPINQ7Z6K5 226 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 GALNT15Q8N3T1 639 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 JMJD4Q9H9V9 463 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 C1orf232A0A0U1RR37 186 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 USP27XA6NNY8 438 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 CD3EAPO15446 510 aaKnown RBP13.17□□□□□ -0.3
COL6A3-203ENST00000353578 CYP2E1P05181 493 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-203ENST00000353578 FGD2Q7Z6J4 655 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 SELENONQ9NZV5 590 aa13.17□□□□□ -0.3
COL6A3-203ENST00000353578 LRRN2O75325 713 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 GRIK1P39086 918 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 NAA20P61599 178 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 ZBTB49Q6ZSB9 765 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 ZFYVE1Q9HBF4 777 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 CDK12Q9NYV4 1490 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 M0QZ92 97 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 PLCG1P19174 1290 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 SH2D3CQ8N5H7 860 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 ZBTB38Q8NAP3 1195 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 OR7A2PQ8NGA2 310 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 E2F7Q96AV8 911 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 NOL6Q9H6R4 1146 aaKnown RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 MAGEE1Q9HCI5 957 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 ESYT3A0FGR9 886 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 PCNAP12004 261 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 CCNA2P20248 432 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 SOX5P35711 763 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 KCNK10P57789 538 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 ITKQ08881 620 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 CD302Q8IX05 232 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 PPM1NQ8N819 430 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 ACTRT1Q8TDG2 376 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 NDNQ99608 321 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 TBCCD1Q9NVR7 557 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 HDAC6Q9UBN7 1215 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 GPC6Q9Y625 555 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 SPRP35270 261 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 KIAA0408Q6ZU52 694 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 ZNF589Q86UQ0 364 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 CAMK1DQ8IU85 385 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 SMCR8Q8TEV9 937 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 OSBPL11Q9BXB4 747 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 WDR62O43379 1518 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 CCDC195A0A1B0GUA6 201 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 FGFR4P22455 802 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 PAPD7Q5XG87 772 aaKnown RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 RINLQ6ZS11 566 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 BARGINQ6ZT62 677 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 FAM162AQ96A26 154 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms