RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 COILP38432 576 aaPredicted RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 GEMIN4P57678 1058 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 TROAPQ12815 778 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 IFIT5Q13325 482 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 PPP2R5CQ13362 524 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 LPIN1Q14693 890 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 HLFQ16534 295 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 TMEM266Q2M3C6 531 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 EDRF1Q3B7T1 1238 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 ANKRD20A4Q4UJ75 823 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 DUS1LQ6P1R4 473 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 MIGA2Q7L4E1 593 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 KRT25Q7Z3Z0 450 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 LRRC6Q86X45 466 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 TMPRSS6Q8IU80 811 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 ENAHQ8N8S7 591 aaPredicted RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 TRPC4APQ8TEL6 797 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 C18orf8Q96DM3 657 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 ERVK-5Q9HDB9 667 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 CYLDQ9NQC7 956 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 PFDN4Q9NQP4 134 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 CTDP1Q9Y5B0 961 aaPredicted RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 MYH3P11055 1940 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 SH3PXD2BA1X283 911 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 TMEM88BA6NKF7 163 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 RNASEH1O60930 286 aaKnown RBP8.59□□□□□ -1.03
ATG4A-201ENST00000343524 LGR5O75473 907 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 CLPTM1O96005 669 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 UCHL3P15374 230 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 GTF2H1P32780 548 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 STAT1P42224 750 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 ACTR3P61158 418 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 TCEAL1Q15170 157 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 DCAF12L1Q5VU92 463 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 PACS1Q6VY07 963 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 TRIM67Q6ZTA4 783 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 CENPUQ71F23 418 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 RSPH3Q86UC2 560 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 MTDHQ86UE4 582 aaKnown RBP8.59□□□□□ -1.03
ATG4A-201ENST00000343524 SATL1Q86VE3 508 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 LAPTM4BQ86VI4 370 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 GPIHBP1Q8IV16 184 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 ZC3H3Q8IXZ2 948 aaKnown RBP8.59□□□□□ -1.03
ATG4A-201ENST00000343524 SLC15A3Q8IY34 581 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 PRELID2Q8N945 189 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 ANKK1Q8NFD2 765 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 CEP70Q8NHQ1 597 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 DEPTORQ8TB45 409 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 CASP10Q92851 521 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 FAM161BQ96MY7 647 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 BIRC8Q96P09 236 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 CGREF1Q99674 301 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 PLA2G12BQ9BX93 195 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 KLHL4Q9C0H6 718 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 ARMT1Q9H993 441 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 C17orf75Q9HAS0 396 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 PLGRKTQ9HBL7 147 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 ARHGEF38Q9NXL2 777 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 CLIC5Q9NZA1 410 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 PIM2Q9P1W9 311 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 TELO2Q9Y4R8 837 aa8.59□□□□□ -1.03
ATG4A-201ENST00000343524 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.59□□□□□ -1.03
ATG4A-201ENST00000343524 CCDC160A6NGH7 325 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 DPYSL4O14531 572 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 PEX1O43933 1283 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 ADCY3O60266 1144 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 SORBS3O60504 671 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 TGDSO95455 350 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 RARBP10826 455 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 GALK1P51570 392 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 GALCP54803 685 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 WDR4P57081 412 aaKnown RBP8.58□□□□□ -1.04
ATG4A-201ENST00000343524 COG7P83436 770 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 CDK16Q00536 496 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 ZBTB16Q05516 673 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 SEPT6Q14141 434 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 MPP2Q14168 576 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 RASA2Q15283 850 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 SEPT7Q16181 437 aaKnown RBP8.58□□□□□ -1.04
ATG4A-201ENST00000343524 BCL2A1Q16548 175 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 EXOC3L4Q17RC7 722 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 MMEL1Q495T6 779 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 CERKLQ49MI3 558 aaPredicted RBP8.58□□□□□ -1.04
ATG4A-201ENST00000343524 DALRD3Q5D0E6 543 aaKnown RBP8.58□□□□□ -1.04
ATG4A-201ENST00000343524 HABP4Q5JVS0 413 aaKnown RBP8.58□□□□□ -1.04
ATG4A-201ENST00000343524 LRRC8BQ6P9F7 803 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 KYAT3Q6YP21 454 aaKnown RBP8.58□□□□□ -1.04
ATG4A-201ENST00000343524 Q6ZNX1 250 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 RBM44Q6ZP01 1051 aaKnown RBP8.58□□□□□ -1.04
ATG4A-201ENST00000343524 FRMD5Q7Z6J6 570 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 DHDDSQ86SQ9 333 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 TRABD2AQ86V40 505 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 SLC35G2Q8TBE7 412 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 U2AF1L4Q8WU68 220 aaKnown RBP8.58□□□□□ -1.04
ATG4A-201ENST00000343524 SNRNP27Q8WVK2 155 aaKnown RBP8.58□□□□□ -1.04
ATG4A-201ENST00000343524 CFAP57Q96MR6 1250 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 PLIN2Q99541 437 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 ZSWIM1Q9BR11 485 aa8.58□□□□□ -1.04
ATG4A-201ENST00000343524 MXD3Q9BW11 206 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms