RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 HP1BP3Q5SSJ5 553 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SCARA3Q6AZY7 606 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TPTE2Q6XPS3 522 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CYFIP1Q7L576 1253 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 KLHL7Q8IXQ5 586 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 COLGALT2Q8IYK4 626 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ADCY4Q8NFM4 1077 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 EPS8L3Q8TE67 593 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TAMM41Q96BW9 452 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 HSPBAP1Q96EW2 488 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TWNKQ96RR1 684 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SMARCAD1Q9H4L7 1026 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 DNAJC18Q9H819 358 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 HMG20AQ9NP66 347 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ANKMY1Q9P2S6 941 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CNOT11Q9UKZ1 510 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CDH7Q9ULB5 785 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 MUSKO15146 869 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 POLR1CO15160 346 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ITM2AO43736 263 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 BAG2O95816 211 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 IFNA14P01570 189 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 DLATP10515 647 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ZNF23P17027 643 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CFL1P23528 166 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CENPAP49450 140 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 DRG2P55039 364 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 HERVK_113P62684 666 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 KRT17Q04695 432 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CDC16Q13042 620 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ADCK5Q3MIX3 580 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 MTERF2Q49AM1 385 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 IQSEC1Q6DN90 963 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ZNF746Q6NUN9 644 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TICAM1Q8IUC6 712 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TTC13Q8NBP0 860 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SGCDQ92629 289 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ERLEC1Q96DZ1 483 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ZNF486Q96H40 463 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 RPRD1AQ96P16 312 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 NT5C3AQ9H0P0 336 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SLA2Q9H6Q3 261 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 GPBP1L1Q9HC44 474 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 NEK6Q9HC98 313 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SSU72Q9NP77 194 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 AVENQ9NQS1 362 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 MBIPQ9NS73 344 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 NPAP1Q9NZP6 1156 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SPG7Q9UQ90 795 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CAB39Q9Y376 341 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 MINK1Q8N4C8 1332 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 FAM170AA1A519 330 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 GGPS1O95749 300 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 HNRNPH3P31942 346 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 MARSP56192 900 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 UBXN2AP68543 259 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 KRT31Q15323 416 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TGFBIQ15582 683 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 USP41Q3LFD5 358 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CDONQ4KMG0 1287 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 AGAP7PQ5VUJ5 663 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CYP4X1Q8N118 509 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 FITM2Q8N6M3 262 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SHCBP1Q8NEM2 672 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 BEST2Q8NFU1 509 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SLC22A8Q8TCC7 542 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ASIC4Q96FT7 647 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 DSCC1Q9BVC3 393 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 PAIP1Q9H074 479 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 HSD3B7Q9H2F3 369 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 FBXO28Q9NVF7 368 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 UBE4BO95155 1302 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 A2MP01023 1474 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 PRR23AA6NEV1 266 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ZSCAN5BA6NJL1 495 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 PDE2AO00408 941 aaPredicted RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SNAP91O60641 907 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 SPAG6O75602 509 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 EPN2O95208 641 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 GSNP06396 782 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ZNF3P17036 446 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 FUT4P22083 530 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CES1P23141 567 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 EPHB2P29323 1055 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 IL12AP29459 219 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 WEE1P30291 646 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 PSMC2P35998 433 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 IGHMBP2P38935 993 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 HARS2P49590 506 aaKnown RBP4.35□□□□□ -1.71
NEDD4-201ENST00000338963 KCTD2Q14681 263 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 PALB2Q86YC2 1186 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ELMOD2Q8IZ81 293 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 NPLOC4Q8TAT6 608 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 TEX13BQ9BXU2 312 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 OR51B5Q9H339 312 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 MAGEF1Q9HAY2 307 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 CPNE5Q9HCH3 593 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 ASIC3Q9UHC3 531 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 IP6K2Q9UHH9 426 aa4.35□□□□□ -1.71
NEDD4-201ENST00000338963 KIAA1257Q9ULG3 409 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms