RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 CCDC22O60826 627 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 CEP55Q53EZ4 464 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 OLFML2BQ68BL8 750 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 PPP1R18Q6NYC8 613 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 TRIM48Q8IWZ4 208 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 SPASTQ9UBP0 616 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 ADGRL2O95490 1459 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 NCF1BA6NI72 391 aaPredicted RBP13.22□□□□□ -0.29
SDC3-201ENST00000336798 NCF1CA8MVU1 366 aaPredicted RBP13.22□□□□□ -0.29
SDC3-201ENST00000336798 NCF1P14598 390 aaPredicted RBP13.22□□□□□ -0.29
SDC3-201ENST00000336798 MAP3K10Q02779 954 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 NCOA4Q13772 614 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 GOLGA7BQ2TAP0 167 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 ZC2HC1CQ53FD0 456 aaPredicted RBP13.22□□□□□ -0.29
SDC3-201ENST00000336798 IYDQ6PHW0 289 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 CHSY1Q86X52 802 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 ATP6V1G3Q96LB4 118 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 LRRC1Q9BTT6 524 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 H0Y626 953 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 TRIM16O95361 564 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 HSPA9P38646 679 aaKnown RBP13.22□□□□□ -0.29
SDC3-201ENST00000336798 SLC44A2Q8IWA5 706 aaPredicted RBP13.22□□□□□ -0.29
SDC3-201ENST00000336798 RFFLQ8WZ73 363 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 C9orf72Q96LT7 481 aa13.22□□□□□ -0.29
SDC3-201ENST00000336798 CAB39Q9Y376 341 aaPredicted RBP13.22□□□□□ -0.29
SDC3-201ENST00000336798 GSNP06396 782 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 HPCAP84074 193 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 PRKCQQ04759 706 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 CLEC4GQ6UXB4 293 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 TRIM72Q6ZMU5 477 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 VN1R5Q7Z5H4 357 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 KLC4Q9NSK0 619 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 ABI2Q9NYB9 513 aaPredicted RBP13.21□□□□□ -0.29
SDC3-201ENST00000336798 UTP6Q9NYH9 597 aaKnown RBP13.21□□□□□ -0.29
SDC3-201ENST00000336798 SHANK2Q9UPX8 1470 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 IGKV5-2P06315 115 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 MYL2P10916 166 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 RBP5P82980 135 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 SRBD1Q8N5C6 995 aaKnown RBP13.21□□□□□ -0.29
SDC3-201ENST00000336798 TBC1D4O60343 1298 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 CCDC81Q6ZN84 652 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 ZNF614Q8N883 585 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 PPP2R3CQ969Q6 453 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 MAP10Q9P2G4 905 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 NAGPAQ9UK23 515 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 NLRP1Q9C000 1473 aa13.21□□□□□ -0.29
SDC3-201ENST00000336798 DNMT1P26358 1616 aaKnown RBP13.21□□□□□ -0.29
SDC3-201ENST00000336798 CYP27B1O15528 508 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 NPTXRO95502 500 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 APOA1P02647 267 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 OR2W6PQ8NHA6 318 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 DIS3LQ8TF46 1054 aaKnown RBP13.21□□□□□ -0.3
SDC3-201ENST00000336798 SGF29Q96ES7 293 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 SENP7Q9BQF6 1050 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 PKD2L2Q9NZM6 624 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 FAM205CA6NFA0 338 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 GSG1L2A8MUP6 293 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 ZBTB39O15060 712 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 NBNO60934 754 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 SRP72O76094 671 aaKnown RBP13.21□□□□□ -0.3
SDC3-201ENST00000336798 R3HDM1Q15032 1099 aaKnown RBP13.21□□□□□ -0.3
SDC3-201ENST00000336798 SEZ6Q53EL9 994 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 RIN3Q8TB24 985 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 TRIM10Q9UDY6 481 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 PRG3Q9Y2Y8 225 aaPredicted RBP13.21□□□□□ -0.3
SDC3-201ENST00000336798 ABCA5Q8WWZ7 1642 aa13.21□□□□□ -0.3
SDC3-201ENST00000336798 GRID2IPA4D2P6 1211 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 KRT75O95678 551 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 CDC16Q13042 620 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 KHDRBS2Q5VWX1 349 aaKnown RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 MTHFD1LQ6UB35 978 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 FMR1NBQ8N0W7 255 aaPredicted RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 SH2D3CQ8N5H7 860 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 ZNF579Q8NAF0 562 aaKnown RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 RBBP8NLQ8NC74 664 aaPredicted RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 KAT2BQ92831 832 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 VPS50Q96JG6 964 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 MRPL1Q9BYD6 325 aaKnown RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 METTL5Q9NRN9 209 aaKnown RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 ROBO2Q9HCK4 1378 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 TFRCP02786 760 aaKnown RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 NCAM1P13591 858 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 PLOD1Q02809 727 aaPredicted RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 TAP1Q03518 808 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 DDX39BQ13838 428 aaKnown RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 EPHA7Q15375 998 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 RCOR2Q8IZ40 523 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 STKLD1Q8NE28 680 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 SNRNP27Q8WVK2 155 aaKnown RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 WWP1Q9H0M0 922 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 DMAP1Q9NPF5 467 aaPredicted RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 GYS1P13807 737 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 EFNA5P52803 228 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 ABCE1P61221 599 aaKnown RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 STX3Q13277 289 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 ANGEL2Q5VTE6 544 aaKnown RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 ERAP2Q6P179 960 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 MB21D2Q8IYB1 491 aaPredicted RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 REEP2Q9BRK0 252 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 FAM187AA6NFU0 413 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms