RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 GALNT8Q9NY28 637 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 SLC17A7Q9P2U7 560 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 ANAPC7Q9UJX3 599 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 ZNF652Q9Y2D9 606 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 SETSIPP0DME0 302 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 BCRP11274 1271 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 BFSP1Q12934 665 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 DYNC1I2Q13409 638 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 PABPC1LQ4VXU2 614 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 ANKMY2Q8IV38 441 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 NSL1Q96IY1 281 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 ZNF287Q9HBT7 754 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 STX18Q9P2W9 335 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 PCDHA1Q9Y5I3 950 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 OR6B1O95007 311 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 ARHGAP4P98171 946 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 FMO1Q01740 532 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 MYBPC3Q14896 1274 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 SHROOM1Q2M3G4 852 aaPredicted RBP14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 ASPRV1Q53RT3 343 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 CFAP157Q5JU67 520 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 PPM1KQ8N3J5 372 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 EIF2AK1Q9BQI3 630 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 ASCC2Q9H1I8 757 aaPredicted RBP14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 NOCTQ9UK39 431 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 ACTL7BQ9Y614 415 aa14.23□□□□□ -0.13
CCDC88C-201ENST00000331194 TYROBPO43914 113 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 SORBS3O60504 671 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 DHX38Q92620 1227 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 SLCO2A1Q92959 643 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 DNAJC1Q96KC8 554 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 DNAAF2Q9NVR5 837 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 RHBDL2Q9NX52 303 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 TRPC5Q9UL62 973 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 DDX60LQ5H9U9 1706 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 MYH11P35749 1972 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 ZBTB5O15062 677 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 ZSCAN9O15535 394 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 PRPF4O43172 522 aaKnown RBP eCLIP14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 RXRBP28702 533 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 SSTR3P32745 418 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 PGM1P36871 562 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 GAD2Q05329 585 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 DEUP1Q05D60 604 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 ANKRD23Q86SG2 305 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 NRAPQ86VF7 1730 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 KREMEN1Q96MU8 473 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 PLEKHG4BQ96PX9 1271 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 SAR1AQ9NR31 198 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 PDP2Q9P2J9 529 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 BLOC1S6Q9UL45 172 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 NEU2Q9Y3R4 380 aa14.22□□□□□ -0.13
CCDC88C-201ENST00000331194 hCG_1984214I3L0E3 225 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 HNRNPRO43390 633 aaKnown RBP14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 ESRRAP11474 423 aaPredicted RBP14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 HOXA13P31271 388 aaPredicted RBP14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 PPP4CP60510 307 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 USP46P62068 366 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 QRICH1Q2TAL8 776 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 USH1GQ495M9 461 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 LIN52Q52LA3 116 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 TRAPPC3LQ5T215 181 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 FYB2Q5VWT5 728 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 TRMT1LQ7Z2T5 733 aaKnown RBP14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 ZNF713Q8N859 430 aaPredicted RBP14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 LENG9Q96B70 501 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 NMD3Q96D46 503 aaKnown RBP14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 FIZ1Q96SL8 496 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 MKNK1Q9BUB5 465 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 EBF3Q9H4W6 596 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 ZWILCHQ9H900 591 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 ANKFY1Q9P2R3 1169 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 PCDHGA4Q9Y5G9 962 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 KAT6AQ92794 2004 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 MSH4O15457 936 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 POTEJP0CG39 1038 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 MAPK4P31152 587 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 GRIA2P42262 883 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 KAZNQ674X7 775 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 ALYREFQ86V81 257 aaKnown RBP14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 FAM178BQ8IXR5 827 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 ERMNQ8TAM6 284 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 KCNK13Q9HB14 408 aa14.21□□□□□ -0.13
CCDC88C-201ENST00000331194 MEIS2O14770 477 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 STK10O94804 968 aaKnown RBP14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 CYP1A2P05177 515 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 IMPDH2P12268 514 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 CD58P19256 250 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 MAGEA8P43361 318 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 ZNF720Q7Z2F6 126 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 SLFN12Q8IYM2 578 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 ZBED8Q8IZ13 594 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 RIBC1Q8N443 379 aaPredicted RBP14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 ZNF276Q8N554 614 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 PLEKHO2Q8TD55 490 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 TCP10LQ8TDR4 215 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 TMEM120AQ9BXJ8 343 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 ZNF219Q9P2Y4 722 aaPredicted RBP14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 PPM1HQ9ULR3 514 aa14.21□□□□□ -0.14
CCDC88C-201ENST00000331194 PHF24Q9UPV7 400 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms