RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 MAP3K20Q9NYL2 800 aaKnown RBP16.53■□□□□ 0.24
SHROOM1-201ENST00000319854 AGO2Q9UKV8 859 aaKnown RBP16.53■□□□□ 0.24
SHROOM1-201ENST00000319854 DAAM1Q9Y4D1 1078 aa16.53■□□□□ 0.24
SHROOM1-201ENST00000319854 TCP11X1B4DZS4 312 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 CLDN3O15551 220 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 GJB1P08034 283 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 SUPT20HL2P0C7V6 817 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 SUPT20HL1Q3ZLR7 823 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 TMEM270Q6UE05 265 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 CCDC105Q8IYK2 499 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 LRRC71Q8N4P6 559 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 SLC7A3Q8WY07 619 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 HEMGNQ9BXL5 484 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 HAPLN2Q9GZV7 340 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 CCDC134Q9H6E4 229 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 ARHGEF3Q9NR81 526 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 BTBD7Q9P203 1132 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 ZMYND8Q9ULU4 1186 aaPredicted RBP16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 IRF6O14896 467 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 EDN1P05305 212 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 CD58P19256 250 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 FGFR4P22455 802 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 TMEM130Q8N3G9 435 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 ATG4AQ8WYN0 398 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 ZSWIM1Q9BR11 485 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 MSTO1Q9BUK6 570 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 ELP3Q9H9T3 547 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 USP15Q9Y4E8 981 aaPredicted RBP16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 UMODL1Q5DID0 1318 aa16.52■□□□□ 0.24
SHROOM1-201ENST00000319854 KIF13BQ9NQT8 1826 aa16.52■□□□□ 0.23
SHROOM1-201ENST00000319854 CSDE1O75534 798 aaKnown RBP16.52■□□□□ 0.23
SHROOM1-201ENST00000319854 HLA-DRAP01903 254 aa16.52■□□□□ 0.23
SHROOM1-201ENST00000319854 RFX1P22670 979 aa16.52■□□□□ 0.23
SHROOM1-201ENST00000319854 TUBP50607 506 aa16.52■□□□□ 0.23
SHROOM1-201ENST00000319854 GHRHRQ02643 423 aa16.52■□□□□ 0.23
SHROOM1-201ENST00000319854 XKR3Q5GH77 459 aa16.52■□□□□ 0.23
SHROOM1-201ENST00000319854 TRIM68Q6AZZ1 485 aa16.52■□□□□ 0.23
SHROOM1-201ENST00000319854 CLMNQ96JQ2 1002 aa16.52■□□□□ 0.23
SHROOM1-201ENST00000319854 CARD9Q9H257 536 aa16.52■□□□□ 0.23
SHROOM1-201ENST00000319854 RBAKQ9NYW8 714 aaPredicted RBP16.52■□□□□ 0.23
SHROOM1-201ENST00000319854 GPRC5DQ9NZD1 345 aa16.52■□□□□ 0.23
SHROOM1-201ENST00000319854 DPPA5A6NC42 116 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 P4HA2O15460 535 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 ATP2A2P16615 1042 aaKnown RBP16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 GLRA2P23416 452 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 RRM1P23921 792 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 CDR2Q01850 454 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 RNASELQ05823 741 aaKnown RBP16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 WDR44Q5JSH3 913 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 SEL1L2Q5TEA6 688 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 TDRD10Q5VZ19 366 aaKnown RBP16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 APOBEC3FQ8IUX4 373 aaKnown RBP16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 C11orf70Q9BRQ4 267 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 ST6GALNAC4Q9H4F1 302 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 KLHL11Q9NVR0 708 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 SPATA31C2B4DYI2 1134 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 O00370 1275 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 PTENP60484 403 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 TMEM132AQ24JP5 1023 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 TMEM63BQ5T3F8 832 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 TTC27Q6P3X3 843 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 ASRGL1Q7L266 308 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 EXOC3L1Q86VI1 746 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 JAMLQ86YT9 394 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 PRELID2Q8N945 189 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 OR5B17Q8NGF7 314 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 TRAPPC12Q8WVT3 735 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 RMDN2Q96LZ7 410 aa16.51■□□□□ 0.23
SHROOM1-201ENST00000319854 C19orf81C9J6K1 198 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 KIAA0391O15091 583 aaKnown RBP16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 UBA1P22314 1058 aaKnown RBP16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 AUHQ13825 339 aaKnown RBP16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 TAF11Q15544 211 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 BRDTQ58F21 947 aaPredicted RBP16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 ANKLE1Q8NAG6 615 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 UTP4Q969X6 686 aaKnown RBP16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 MFSD14AQ96MC6 490 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 OSBPL1AQ9BXW6 950 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 HOMER3Q9NSC5 361 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 ETAA1Q9NY74 926 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 AFG3L2Q9Y4W6 797 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 PCDHB4Q9Y5E5 795 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 POLR2AP24928 1970 aaKnown RBP16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 COL11A1P12107 1806 aaPredicted RBP16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 OATP04181 439 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 MAPK4P31152 587 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 TNFSF9P41273 254 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 GPC3P51654 580 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 MGAT5Q09328 741 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 SLMAPQ14BN4 828 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 CCDC137Q6PK04 289 aaKnown RBP16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 FAM43BQ6ZT52 329 aaPredicted RBP16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 NAF1Q96HR8 494 aaKnown RBP16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 TIPINQ9BVW5 301 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 RAB17Q9H0T7 212 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 GRHL1Q9NZI5 618 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 ZFATQ9P243 1243 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 ZNF112Q9UJU3 913 aa16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 USP2O75604 605 aaPredicted RBP16.5■□□□□ 0.23
SHROOM1-201ENST00000319854 SNUPNO95149 360 aaKnown RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms