RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 HOOK3Q86VS8 718 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 PHF13Q86YI8 300 aaPredicted RBP21.34■■□□□ 1.01
VPS53-201ENST00000291074 SULF1Q8IWU6 871 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 FBXO16Q8IX29 292 aaPredicted RBP21.34■■□□□ 1.01
VPS53-201ENST00000291074 EPS8L3Q8TE67 593 aaKnown RBP21.34■■□□□ 1.01
VPS53-201ENST00000291074 ACO2Q99798 780 aaKnown RBP21.34■■□□□ 1.01
VPS53-201ENST00000291074 IMPG2Q9BZV3 1241 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.34■■□□□ 1.01
VPS53-201ENST00000291074 A0A0G2JLL6 359 aaPredicted RBP21.34■■□□□ 1.01
VPS53-201ENST00000291074 TLR3O15455 904 aaKnown RBP21.34■■□□□ 1.01
VPS53-201ENST00000291074 TGFB3P10600 412 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 TCF4P15884 667 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 BRD2P25440 801 aaKnown RBP21.34■■□□□ 1.01
VPS53-201ENST00000291074 SLCO1A2P46721 670 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 VPS41P49754 854 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 RPL7AP62424 266 aaKnown RBP21.34■■□□□ 1.01
VPS53-201ENST00000291074 Q3C1V9 767 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 PLEKHA7Q6IQ23 1121 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 SCARA5Q6ZMJ2 495 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 PRRT2Q7Z6L0 340 aaPredicted RBP21.34■■□□□ 1.01
VPS53-201ENST00000291074 UBR7Q8N806 425 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 DCLK3Q9C098 648 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 NOP56O00567 594 aaKnown RBP21.33■■□□□ 1.01
VPS53-201ENST00000291074 RIPK2O43353 540 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 ZNF132P52740 706 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 CALCOCO2Q13137 446 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 RHPN2Q8IUC4 686 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 WDR49Q8IV35 697 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 TMEM130Q8N3G9 435 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 DCPSQ96C86 337 aaKnown RBP21.33■■□□□ 1.01
VPS53-201ENST00000291074 CCDC114Q96M63 670 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 RASSF4Q9H2L5 321 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 DNAJC17Q9NVM6 304 aaKnown RBP21.33■■□□□ 1.01
VPS53-201ENST00000291074 ABLIM1O14639 778 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 EFNA5P52803 228 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 IER5Q5VY09 327 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 CDCA2Q69YH5 1023 aaPredicted RBP21.33■■□□□ 1.01
VPS53-201ENST00000291074 CEP120Q8N960 986 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 SLCO2A1Q92959 643 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 DDX23Q9BUQ8 820 aaKnown RBP21.33■■□□□ 1.01
VPS53-201ENST00000291074 AAASQ9NRG9 546 aa21.33■■□□□ 1.01
VPS53-201ENST00000291074 ANK1P16157 1881 aa21.33■■□□□ 1
VPS53-201ENST00000291074 B4GALT5O43286 388 aa21.32■■□□□ 1
VPS53-201ENST00000291074 POTEJP0CG39 1038 aa21.32■■□□□ 1
VPS53-201ENST00000291074 CHKAP35790 457 aa21.32■■□□□ 1
VPS53-201ENST00000291074 IFI35P80217 286 aaPredicted RBP21.32■■□□□ 1
VPS53-201ENST00000291074 ATP13A4Q4VNC1 1196 aa21.32■■□□□ 1
VPS53-201ENST00000291074 WDR78Q5VTH9 848 aa21.32■■□□□ 1
VPS53-201ENST00000291074 THNSL1Q8IYQ7 743 aa21.32■■□□□ 1
VPS53-201ENST00000291074 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.32■■□□□ 1
VPS53-201ENST00000291074 NLRP4Q96MN2 994 aa21.32■■□□□ 1
VPS53-201ENST00000291074 MRPL47Q9HD33 250 aaKnown RBP21.32■■□□□ 1
VPS53-201ENST00000291074 WEE2P0C1S8 567 aa21.32■■□□□ 1
VPS53-201ENST00000291074 RARGP13631 454 aa21.32■■□□□ 1
VPS53-201ENST00000291074 TFAMQ00059 246 aaKnown RBP21.32■■□□□ 1
VPS53-201ENST00000291074 MAPK6Q16659 721 aa21.32■■□□□ 1
VPS53-201ENST00000291074 RHOT1Q8IXI2 618 aa21.32■■□□□ 1
VPS53-201ENST00000291074 FAM167AQ96KS9 214 aa21.32■■□□□ 1
VPS53-201ENST00000291074 OGTO15294 1046 aa21.32■■□□□ 1
VPS53-201ENST00000291074 FAM107AO95990 144 aa21.32■■□□□ 1
VPS53-201ENST00000291074 C1QBPQ07021 282 aaKnown RBP21.32■■□□□ 1
VPS53-201ENST00000291074 KLF1Q13351 362 aaPredicted RBP21.32■■□□□ 1
VPS53-201ENST00000291074 PLCB4Q15147 1175 aa21.32■■□□□ 1
VPS53-201ENST00000291074 CELF3Q5SZQ8 465 aaKnown RBP21.32■■□□□ 1
VPS53-201ENST00000291074 ZBTB8OSQ8IWT0 167 aa21.32■■□□□ 1
VPS53-201ENST00000291074 RAPGEF5Q92565 580 aa21.32■■□□□ 1
VPS53-201ENST00000291074 PWWP2AQ96N64 755 aa21.32■■□□□ 1
VPS53-201ENST00000291074 CISHQ9NSE2 258 aa21.32■■□□□ 1
VPS53-201ENST00000291074 PI4K2BG5E9Z4 385 aa21.31■■□□□ 1
VPS53-201ENST00000291074 PSTPIP1O43586 416 aa21.31■■□□□ 1
VPS53-201ENST00000291074 IVDP26440 423 aa21.31■■□□□ 1
VPS53-201ENST00000291074 SLMAPQ14BN4 828 aa21.31■■□□□ 1
VPS53-201ENST00000291074 PRUNE1Q86TP1 453 aa21.31■■□□□ 1
VPS53-201ENST00000291074 FEZF2Q8TBJ5 459 aa21.31■■□□□ 1
VPS53-201ENST00000291074 VCPIP1Q96JH7 1222 aa21.31■■□□□ 1
VPS53-201ENST00000291074 SPATA33Q96N06 139 aa21.31■■□□□ 1
VPS53-201ENST00000291074 CDC42EP4Q9H3Q1 356 aaKnown RBP21.31■■□□□ 1
VPS53-201ENST00000291074 ADARB2Q9NS39 739 aaKnown RBP21.31■■□□□ 1
VPS53-201ENST00000291074 RBPJLQ9UBG7 517 aa21.31■■□□□ 1
VPS53-201ENST00000291074 CPSF3Q9UKF6 684 aaKnown RBP21.31■■□□□ 1
VPS53-201ENST00000291074 SCINQ9Y6U3 715 aa21.31■■□□□ 1
VPS53-201ENST00000291074 TRAPPC3O43617 180 aa21.31■■□□□ 1
VPS53-201ENST00000291074 MMP8P22894 467 aa21.31■■□□□ 1
VPS53-201ENST00000291074 IREB2P48200 963 aaKnown RBP21.31■■□□□ 1
VPS53-201ENST00000291074 CHADLQ6NUI6 762 aa21.31■■□□□ 1
VPS53-201ENST00000291074 OSBPL8Q9BZF1 889 aa21.31■■□□□ 1
VPS53-201ENST00000291074 WHRNQ9P202 907 aa21.31■■□□□ 1
VPS53-201ENST00000291074 RGS16O15492 202 aaPredicted RBP21.3■■□□□ 1
VPS53-201ENST00000291074 ACSL3O95573 720 aa21.3■■□□□ 1
VPS53-201ENST00000291074 HOXC6P09630 235 aa21.3■■□□□ 1
VPS53-201ENST00000291074 CLCN3P51790 818 aa21.3■■□□□ 1
VPS53-201ENST00000291074 ADCY2Q08462 1091 aa21.3■■□□□ 1
VPS53-201ENST00000291074 ZNF252P-AS1Q0IIN9 211 aa21.3■■□□□ 1
VPS53-201ENST00000291074 PTK6Q13882 451 aa21.3■■□□□ 1
VPS53-201ENST00000291074 BYSLQ13895 437 aaKnown RBP21.3■■□□□ 1
VPS53-201ENST00000291074 QPCTQ16769 361 aa21.3■■□□□ 1
VPS53-201ENST00000291074 EEF1DP3Q658K8 133 aa21.3■■□□□ 1
VPS53-201ENST00000291074 CCDC125Q86Z20 511 aa21.3■■□□□ 1
VPS53-201ENST00000291074 PGM2Q96G03 612 aa21.3■■□□□ 1
VPS53-201ENST00000291074 SELENOSQ9BQE4 189 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms