RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 TLE6Q9H808 572 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 MRPL17Q9NRX2 175 aaKnown RBP13.75□□□□□ -0.21
SS18-202ENST00000269138 ARMCX3Q9UH62 379 aaPredicted RBP13.75□□□□□ -0.21
SS18-202ENST00000269138 STXBP5LQ9Y2K9 1186 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 SYCE3A1L190 88 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 M0QZQ0 153 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 IKBKBO14920 756 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 PHACTR2O75167 634 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 CNPP09543 421 aaKnown RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 RPL17P18621 184 aaKnown RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 NRIP1P48552 1158 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 MYL6P60660 151 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 ZACNQ401N2 412 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 C15orf39Q6ZRI6 1047 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 FRMD5Q7Z6J6 570 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 LRRC52Q8N7C0 313 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 LNX1Q8TBB1 728 aaPredicted RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 HPDLQ96IR7 371 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 STK39Q9UEW8 545 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 PCDHB8Q9UN66 801 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 IRAK3Q9Y616 596 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 ATG2AQ2TAZ0 1938 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 KPNA7A9QM74 516 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 CYB561D2O14569 222 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 ADAM12O43184 909 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 CLASP2O75122 1294 aaKnown RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 LRRN2O75325 713 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 AP3M2P53677 418 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 RBM10P98175 930 aaKnown RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 ENPEPQ07075 957 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 NCOA4Q13772 614 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 BMS1Q14692 1282 aaKnown RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 TPD52L1Q16890 204 aaPredicted RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 SV2CQ496J9 727 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 HSP90AA4PQ58FG1 418 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 DCAF17Q5H9S7 520 aaPredicted RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 CT47A1Q5JQC4 288 aaPredicted RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 VARS2Q5ST30 1063 aaKnown RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 TCERG1LQ5VWI1 586 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 RSPO2Q6UXX9 243 aaPredicted RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 USP37Q86T82 979 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 GLYCTKQ8IVS8 523 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 MAFAQ8NHW3 353 aaPredicted RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 PIK3R5Q8WYR1 880 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 SLC35C1Q96A29 364 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 ZNF560Q96MR9 790 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 KLHL5Q96PQ7 755 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 FUCA2Q9BTY2 467 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 XYLT2Q9H1B5 865 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 RXFP1Q9HBX9 757 aa13.74□□□□□ -0.21
SS18-202ENST00000269138 METTL14Q9HCE5 456 aaKnown RBP13.74□□□□□ -0.21
SS18-202ENST00000269138 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.74□□□□□ -0.212e-7■■■■■ 220.9
SS18-202ENST00000269138 SCN1AP35498 2009 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 SYN3O14994 580 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 TEX28O15482 410 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 LINC01565O15544 149 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 LETM1O95202 739 aaPredicted RBP13.73□□□□□ -0.21
SS18-202ENST00000269138 FGFR1OPO95684 399 aaKnown RBP13.73□□□□□ -0.21
SS18-202ENST00000269138 HLA-DRAP01903 254 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 PNPLA4P41247 253 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 TRPC3Q13507 836 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 MRPL58Q14197 206 aaKnown RBP13.73□□□□□ -0.21
SS18-202ENST00000269138 PSMD5Q16401 504 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 DUSP6Q16828 381 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 ZSCAN23Q3MJ62 389 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 ANO6Q4KMQ2 910 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 WSCD1Q658N2 575 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 CREBRFQ8IUR6 639 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 ENOX1Q8TC92 643 aaKnown RBP13.73□□□□□ -0.21
SS18-202ENST00000269138 TAS1R2Q8TE23 839 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 CNOT6LQ96LI5 555 aaKnown RBP13.73□□□□□ -0.21
SS18-202ENST00000269138 CLSTN3Q9BQT9 956 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 TMEM8AQ9HCN3 771 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 SAMSN1Q9NSI8 373 aaKnown RBP13.73□□□□□ -0.21
SS18-202ENST00000269138 R3HCC1Q9Y3T6 440 aaKnown RBP13.73□□□□□ -0.21
SS18-202ENST00000269138 SNX9Q9Y5X1 595 aa13.73□□□□□ -0.21
SS18-202ENST00000269138 GNA14O95837 355 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 GTF2H1P32780 548 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 MARSP56192 900 aaKnown RBP13.72□□□□□ -0.21
SS18-202ENST00000269138 MYO1EQ12965 1108 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 CBWD6Q4V339 395 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 CBWD3Q5JTY5 395 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 CBWD5Q5RIA9 395 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 TRIM59Q8IWR1 403 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 APPL2Q8NEU8 664 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 VN1R2Q8NFZ6 395 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 SEMA4DQ92854 862 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 PI4K2AQ9BTU6 479 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 THAP9Q9H5L6 903 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 GDAP2Q9NXN4 497 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 MTRRQ9UBK8 725 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 POLIQ9UNA4 740 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 SSX2IPQ9Y2D8 614 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 NFE2L3Q9Y4A8 694 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 VWA8A3KMH1 1905 aa13.72□□□□□ -0.21
SS18-202ENST00000269138 TBC1D4O60343 1298 aa13.71□□□□□ -0.21
SS18-202ENST00000269138 CCDC192P0DO97 292 aa13.71□□□□□ -0.21
SS18-202ENST00000269138 ODC1P11926 461 aa13.71□□□□□ -0.21
SS18-202ENST00000269138 TYMPP19971 482 aa13.71□□□□□ -0.21
SS18-202ENST00000269138 PAX3P23760 479 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms