RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 H2AFZP0C0S5 128 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 ACOT2P49753 483 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 GPC3P51654 580 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 GUCY2DQ02846 1103 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 DMP1Q13316 513 aaPredicted RBP9.29□□□□□ -0.92
VPS4B-201ENST00000238497 RPS6KA1Q15418 735 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 SLC24A5Q71RS6 500 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 H2AFVQ71UI9 128 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 HDXQ7Z353 690 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 TRAPPC11Q7Z392 1133 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 FRMD5Q7Z6J6 570 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 RNF149Q8NC42 400 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 RUFY1Q96T51 708 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 INO80BQ9C086 356 aaPredicted RBP9.29□□□□□ -0.92
VPS4B-201ENST00000238497 OSGEPQ9NPF4 335 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 CTTNBP2NLQ9P2B4 639 aa9.29□□□□□ -0.92
VPS4B-201ENST00000238497 ADGRA3Q8IWK6 1321 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 A0A1W2PQJ5 194 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 SLC18A3Q16572 532 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 HGSNATQ68CP4 663 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 PPP4R3CPQ6ZMV5 832 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 ZBTB33Q86T24 672 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 NPAS4Q8IUM7 802 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 THNSL1Q8IYQ7 743 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 DAW1Q8N136 415 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 PRPF31Q8WWY3 499 aaKnown RBP9.28□□□□□ -0.92
VPS4B-201ENST00000238497 ERVK-5Q9HDB9 667 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 SNX12Q9UMY4 172 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 CCDC151A5D8V7 595 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 ANKRD63C9JTQ0 380 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 DARSP14868 501 aaKnown RBP9.28□□□□□ -0.92
VPS4B-201ENST00000238497 KCNA5P22460 613 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 CASP8Q14790 479 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 EMC2Q15006 297 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 DPH6Q7L8W6 267 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 SPATA4Q8NEY3 305 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 CTNNBL1Q8WYA6 563 aaPredicted RBP9.28□□□□□ -0.92
VPS4B-201ENST00000238497 ACCSQ96QU6 501 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 APOL6Q9BWW8 343 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 INTS2Q9H0H0 1204 aaKnown RBP9.28□□□□□ -0.92
VPS4B-201ENST00000238497 RBM12Q9NTZ6 932 aaKnown RBP9.28□□□□□ -0.92
VPS4B-201ENST00000238497 HSPBP1Q9NZL4 362 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 TRAF3IP3Q9Y228 551 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 GPR32O75388 356 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 MYBL2P10244 700 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 VAMP7P51809 220 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 HTRA4P83105 476 aaPredicted RBP9.28□□□□□ -0.92
VPS4B-201ENST00000238497 MESDQ14696 234 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 RBM23Q86U06 439 aaKnown RBP9.28□□□□□ -0.92
VPS4B-201ENST00000238497 SLC30A5Q8TAD4 765 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 SLC20A1Q8WUM9 679 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 CEP89Q96ST8 783 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 EPB41L5Q9HCM4 733 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 BCCIPQ9P287 314 aaKnown RBP eCLIP9.28□□□□□ -0.92
VPS4B-201ENST00000238497 HCSTQ9UBK5 93 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 MRPL42Q9Y6G3 142 aaKnown RBP9.28□□□□□ -0.92
VPS4B-201ENST00000238497 SQORQ9Y6N5 450 aa9.28□□□□□ -0.92
VPS4B-201ENST00000238497 MAFO75444 373 aaPredicted RBP9.27□□□□□ -0.93
VPS4B-201ENST00000238497 ERLIN2O94905 339 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 PBX3P40426 434 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 MXI1P50539 228 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 PPP3CAQ08209 521 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 SF3A3Q12874 501 aaKnown RBP eCLIP9.27□□□□□ -0.93
VPS4B-201ENST00000238497 BFSP1Q12934 665 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 CLUL1Q15846 466 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 ZNF394Q53GI3 561 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 XXYLT1Q8NBI6 393 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 FNBP1Q96RU3 617 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 C11orf84Q9BUA3 381 aaPredicted RBP9.27□□□□□ -0.93
VPS4B-201ENST00000238497 NIFKQ9BYG3 293 aaKnown RBP9.27□□□□□ -0.93
VPS4B-201ENST00000238497 TAS2R14Q9NYV8 317 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 NAGPAQ9UK23 515 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 FAN1Q9Y2M0 1017 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 MICAL3Q7RTP6 2002 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 BDP1A6H8Y1 2624 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 H3BQ06 376 aaPredicted RBP9.27□□□□□ -0.93
VPS4B-201ENST00000238497 GRM6O15303 877 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 CYP26A1O43174 497 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 DGKIO75912 1065 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 BMPR1AP36894 532 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 LIG4P49917 911 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 GALCP54803 685 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 AMPD2Q01433 879 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 RNASELQ05823 741 aaKnown RBP9.27□□□□□ -0.93
VPS4B-201ENST00000238497 TRADDQ15628 312 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 TARBP2Q15633 366 aaKnown RBP9.27□□□□□ -0.93
VPS4B-201ENST00000238497 CFAP221Q4G0U5 840 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 FIGNQ5HY92 759 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 KCTD16Q68DU8 428 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 PALB2Q86YC2 1186 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 C4orf19Q8IY42 314 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 LPPQ93052 612 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 IFT74Q96LB3 600 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 TLR10Q9BXR5 811 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 FUT8Q9BYC5 575 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 NUCKS1Q9H1E3 243 aaKnown RBP9.27□□□□□ -0.93
VPS4B-201ENST00000238497 DPH5Q9H2P9 285 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 C1orf112Q9NSG2 853 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 PCDHB12Q9Y5F1 795 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 TANC1Q9C0D5 1861 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms