RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 AK7Q96M32 723 aa6.31□□□□□ -1.4
SCN1A-218ENST00000640036 PHLDB1Q86UU1 1377 aa6.31□□□□□ -1.4
SCN1A-218ENST00000640036 KIAA1211Q6ZU35 1233 aa6.31□□□□□ -1.4
SCN1A-218ENST00000640036 WWC1Q8IX03 1113 aa6.31□□□□□ -1.4
SCN1A-218ENST00000640036 STK32BQ9NY57 414 aa6.31□□□□□ -1.4
SCN1A-218ENST00000640036 TOPBP1Q92547 1522 aa6.31□□□□□ -1.4
SCN1A-218ENST00000640036 FAM135AQ9P2D6 1515 aa6.3□□□□□ -1.4
SCN1A-218ENST00000640036 NRDCO43847 1150 aa6.3□□□□□ -1.4
SCN1A-218ENST00000640036 WWC2Q6AWC2 1192 aa6.3□□□□□ -1.4
SCN1A-218ENST00000640036 DENND4BO75064 1496 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-218ENST00000640036 CABP4P57796 275 aa6.3□□□□□ -1.4
SCN1A-218ENST00000640036 TMEM87AQ8NBN3 555 aa6.3□□□□□ -1.4
SCN1A-218ENST00000640036 MPHOSPH9Q99550 1183 aa6.3□□□□□ -1.4
SCN1A-218ENST00000640036 ROCK1Q13464 1354 aa6.3□□□□□ -1.4
SCN1A-218ENST00000640036 UHRF1BP1Q6BDS2 1440 aa6.3□□□□□ -1.4
SCN1A-218ENST00000640036 CGNL1Q0VF96 1302 aa6.3□□□□□ -1.4
SCN1A-218ENST00000640036 RBM5P52756 815 aaKnown RBP eCLIP6.3□□□□□ -1.4
SCN1A-218ENST00000640036 KCNH5Q8NCM2 988 aa6.29□□□□□ -1.4
SCN1A-218ENST00000640036 FRAT1Q92837 279 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-218ENST00000640036 FAM177BA6PVY3 158 aa6.29□□□□□ -1.4
SCN1A-218ENST00000640036 ZC3H6P61129 1189 aaKnown RBP6.29□□□□□ -1.4
SCN1A-218ENST00000640036 ZNF710Q8N1W2 664 aa6.29□□□□□ -1.4
SCN1A-218ENST00000640036 GOLGA6L6A8MZA4 724 aa6.29□□□□□ -1.4
SCN1A-218ENST00000640036 C11orf95C9JLR9 678 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-218ENST00000640036 ZNF692Q9BU19 519 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-218ENST00000640036 EPRSP07814 1512 aaKnown RBP6.28□□□□□ -1.4
SCN1A-218ENST00000640036 SLC4A10Q6U841 1118 aa6.28□□□□□ -1.4
SCN1A-218ENST00000640036 C9orf78Q9NZ63 289 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-218ENST00000640036 KIF15Q9NS87 1388 aa6.28□□□□□ -1.4
SCN1A-218ENST00000640036 RXRBP28702 533 aa6.28□□□□□ -1.4
SCN1A-218ENST00000640036 XPCQ01831 940 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-218ENST00000640036 CFTRP13569 1480 aa6.28□□□□□ -1.4
SCN1A-218ENST00000640036 NPHP3Q7Z494 1330 aa6.28□□□□□ -1.4
SCN1A-218ENST00000640036 CCDC43Q96MW1 224 aaKnown RBP6.28□□□□□ -1.4
SCN1A-218ENST00000640036 R3HCC1Q9Y3T6 440 aaKnown RBP6.28□□□□□ -1.4
SCN1A-218ENST00000640036 STARD3NLO95772 234 aa6.28□□□□□ -1.4
SCN1A-218ENST00000640036 EIF2S2P20042 333 aaKnown RBP6.28□□□□□ -1.4
SCN1A-218ENST00000640036 NF2P35240 595 aa6.28□□□□□ -1.4
SCN1A-218ENST00000640036 AIDAQ96BJ3 306 aa6.28□□□□□ -1.4
SCN1A-218ENST00000640036 DNMBPQ6XZF7 1577 aa6.28□□□□□ -1.4
SCN1A-218ENST00000640036 LMOD1P29536 600 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-218ENST00000640036 IKQ13123 557 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-218ENST00000640036 MAP3K9P80192 1104 aa6.27□□□□□ -1.41
SCN1A-218ENST00000640036 FANCAO15360 1455 aa6.27□□□□□ -1.41
SCN1A-218ENST00000640036 HMMRO75330 724 aa6.27□□□□□ -1.41
SCN1A-218ENST00000640036 MCCP23508 829 aa6.27□□□□□ -1.41
SCN1A-218ENST00000640036 MYOM3Q5VTT5 1437 aa6.27□□□□□ -1.41
SCN1A-218ENST00000640036 FOXO3O43524 673 aa6.27□□□□□ -1.41
SCN1A-218ENST00000640036 DHX16O60231 1041 aaKnown RBP6.27□□□□□ -1.41
SCN1A-218ENST00000640036 CCDC34Q96HJ3 373 aa6.27□□□□□ -1.41
SCN1A-218ENST00000640036 RFC4P35249 363 aa6.26□□□□□ -1.41
SCN1A-218ENST00000640036 RIC3Q7Z5B4 369 aa6.26□□□□□ -1.41
SCN1A-218ENST00000640036 SPDYE4A6NLX3 237 aa6.26□□□□□ -1.41
SCN1A-218ENST00000640036 IL27Q8NEV9 243 aa6.26□□□□□ -1.41
SCN1A-218ENST00000640036 BCL2L13Q9BXK5 485 aa6.26□□□□□ -1.41
SCN1A-218ENST00000640036 KRT28Q7Z3Y7 464 aa6.25□□□□□ -1.41
SCN1A-218ENST00000640036 TFCP2L1Q9NZI6 479 aa6.25□□□□□ -1.41
SCN1A-218ENST00000640036 AKAP17AQ02040 695 aaKnown RBP6.25□□□□□ -1.41
SCN1A-218ENST00000640036 GNL3LQ9NVN8 582 aaKnown RBP6.25□□□□□ -1.41
SCN1A-218ENST00000640036 TMOD3Q9NYL9 352 aa6.25□□□□□ -1.41
SCN1A-218ENST00000640036 CABP2Q9NPB3 220 aa6.25□□□□□ -1.41
SCN1A-218ENST00000640036 AMOTL2Q9Y2J4 779 aa6.25□□□□□ -1.41
SCN1A-218ENST00000640036 CENPJQ9HC77 1338 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-218ENST00000640036 RPGRQ92834 1020 aaKnown RBP6.25□□□□□ -1.41
SCN1A-218ENST00000640036 ZNF622Q969S3 477 aaKnown RBP eCLIP6.25□□□□□ -1.41
SCN1A-218ENST00000640036 MYCNP04198 464 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-218ENST00000640036 ADGRL1O94910 1474 aa6.24□□□□□ -1.41
SCN1A-218ENST00000640036 RASSF8Q8NHQ8 419 aa6.24□□□□□ -1.41
SCN1A-218ENST00000640036 CCDC136Q96JN2 1154 aa6.24□□□□□ -1.41
SCN1A-218ENST00000640036 RRBP1Q9P2E9 1410 aaKnown RBP6.24□□□□□ -1.41
SCN1A-218ENST00000640036 ZSCAN29Q8IWY8 852 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-218ENST00000640036 TNRQ92752 1358 aa6.24□□□□□ -1.41
SCN1A-218ENST00000640036 GOLGA6L22H0YM25 854 aa6.24□□□□□ -1.41
SCN1A-218ENST00000640036 BIN2Q9UBW5 565 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-218ENST00000640036 RRP7AQ9Y3A4 280 aaKnown RBP6.24□□□□□ -1.41
SCN1A-218ENST00000640036 CCDC27Q2M243 656 aa6.24□□□□□ -1.41
SCN1A-218ENST00000640036 POLA1P09884 1462 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-218ENST00000640036 KTN1Q86UP2 1357 aaKnown RBP6.24□□□□□ -1.41
SCN1A-218ENST00000640036 ST20-MTHFSA0A0A6YYL1 179 aa6.24□□□□□ -1.41
SCN1A-218ENST00000640036 MTHFSP49914 203 aa6.24□□□□□ -1.41
SCN1A-218ENST00000640036 SYNE3Q6ZMZ3 975 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 BICDL1Q6ZP65 573 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 USP21Q9UK80 565 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 KIAA0586Q9BVV6 1533 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 JDP2Q8WYK2 163 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 IGF1RP08069 1367 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 NCKAP5LQ9HCH0 1330 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 TSPOAP1O95153 1857 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 ARHGEF6Q15052 776 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 PRAM1Q96QH2 718 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 PHF8Q9UPP1 1060 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 SLC4A3P48751 1232 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 DPY19L2Q6NUT2 758 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 SMARCC1Q92922 1105 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-218ENST00000640036 CDK19Q9BWU1 502 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 C19orf44Q9H6X5 657 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 DDB1Q16531 1140 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 FYCO1Q9BQS8 1478 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 TCERG1O14776 1098 aaKnown RBP6.23□□□□□ -1.41
SCN1A-218ENST00000640036 GAS2L2Q8NHY3 880 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms