RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	ARHGAP23	Q9P227	1491 aa		13.83	□□□□□ -0.2
PDLIM5-223	ENST00000627587	CFAP65	Q6ZU64	1925 aa	Known RBP	13.82	□□□□□ -0.2
PDLIM5-223	ENST00000627587	CEP152	O94986	1710 aa		13.82	□□□□□ -0.2
PDLIM5-223	ENST00000627587	ANKRD30B	Q9BXX2	1392 aa		13.82	□□□□□ -0.2
PDLIM5-223	ENST00000627587	STAG3	Q9UJ98	1225 aa		13.81	□□□□□ -0.2
PDLIM5-223	ENST00000627587	LTK	P29376	864 aa		13.8	□□□□□ -0.2
PDLIM5-223	ENST00000627587	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.8	□□□□□ -0.2
PDLIM5-223	ENST00000627587	PRDM15	P57071	1507 aa	Predicted RBP	13.8	□□□□□ -0.2
PDLIM5-223	ENST00000627587	NUP155	O75694	1391 aa		13.8	□□□□□ -0.2
PDLIM5-223	ENST00000627587	NEUROD1	Q13562	356 aa		13.8	□□□□□ -0.2
PDLIM5-223	ENST00000627587	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.8	□□□□□ -0.2	2e-6	■□□□□ 11
PDLIM5-223	ENST00000627587	STRCP1	A6NGW2	1772 aa		13.79	□□□□□ -0.2
PDLIM5-223	ENST00000627587	ALK	Q9UM73	1620 aa		13.79	□□□□□ -0.2
PDLIM5-223	ENST00000627587	TMEM2	Q9UHN6	1383 aa		13.78	□□□□□ -0.2
PDLIM5-223	ENST00000627587	KDM5A	P29375	1690 aa	Known RBP	13.77	□□□□□ -0.2
PDLIM5-223	ENST00000627587	LMTK2	Q8IWU2	1503 aa		13.76	□□□□□ -0.21
PDLIM5-223	ENST00000627587	RPRD2	Q5VT52	1461 aa	Known RBP	13.76	□□□□□ -0.21
PDLIM5-223	ENST00000627587	SLC52A1	Q9NWF4	448 aa		13.76	□□□□□ -0.21
PDLIM5-223	ENST00000627587	KCNA6	P17658	529 aa		13.75	□□□□□ -0.21
PDLIM5-223	ENST00000627587	IDI1	Q13907	227 aa		13.75	□□□□□ -0.21
PDLIM5-223	ENST00000627587	TIMELESS	Q9UNS1	1208 aa		13.75	□□□□□ -0.21
PDLIM5-223	ENST00000627587	HDGF	P51858	240 aa	Known RBP	13.74	□□□□□ -0.21
PDLIM5-223	ENST00000627587	PIK3C2B	O00750	1634 aa		13.74	□□□□□ -0.21
PDLIM5-223	ENST00000627587	FAM135B	Q49AJ0	1406 aa		13.74	□□□□□ -0.21
PDLIM5-223	ENST00000627587		E9PCH4	1651 aa		13.73	□□□□□ -0.21
PDLIM5-223	ENST00000627587	EFCAB6	Q5THR3	1501 aa		13.73	□□□□□ -0.21
PDLIM5-223	ENST00000627587	PPP1R15A	O75807	674 aa	Predicted RBP	13.71	□□□□□ -0.21
PDLIM5-223	ENST00000627587	PROSER2	Q86WR7	435 aa	Predicted RBP	13.71	□□□□□ -0.21
PDLIM5-223	ENST00000627587	TONSL	Q96HA7	1378 aa		13.71	□□□□□ -0.22
PDLIM5-223	ENST00000627587	NOS1	P29475	1434 aa		13.71	□□□□□ -0.22
PDLIM5-223	ENST00000627587	TET3	O43151	1660 aa		13.71	□□□□□ -0.22
PDLIM5-223	ENST00000627587	XIRP1	Q702N8	1843 aa	Known RBP	13.7	□□□□□ -0.22
PDLIM5-223	ENST00000627587	TMEM94	Q12767	1356 aa		13.69	□□□□□ -0.22
PDLIM5-223	ENST00000627587	CACNB1	Q02641	598 aa	Predicted RBP	13.67	□□□□□ -0.22
PDLIM5-223	ENST00000627587	BCAN	Q96GW7	911 aa		13.67	□□□□□ -0.22
PDLIM5-223	ENST00000627587	SLC26A8	Q96RN1	970 aa		13.67	□□□□□ -0.22
PDLIM5-223	ENST00000627587	SPHKAP	Q2M3C7	1700 aa		13.67	□□□□□ -0.22
PDLIM5-223	ENST00000627587	ADGRB3	O60242	1522 aa		13.66	□□□□□ -0.22
PDLIM5-223	ENST00000627587	NKTR	P30414	1462 aa	Known RBP	13.66	□□□□□ -0.22
PDLIM5-223	ENST00000627587	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.65	□□□□□ -0.22
PDLIM5-223	ENST00000627587	L3MBTL2	Q969R5	705 aa		13.65	□□□□□ -0.22
PDLIM5-223	ENST00000627587	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.65	□□□□□ -0.22
PDLIM5-223	ENST00000627587	MSH6	P52701	1360 aa		13.65	□□□□□ -0.23
PDLIM5-223	ENST00000627587	RGS17	Q9UGC6	210 aa	Predicted RBP	13.64	□□□□□ -0.23
PDLIM5-223	ENST00000627587	TBX22	Q9Y458	520 aa		13.63	□□□□□ -0.23
PDLIM5-223	ENST00000627587	PLEKHG1	Q9ULL1	1385 aa		13.63	□□□□□ -0.23
PDLIM5-223	ENST00000627587	NWD1	Q149M9	1564 aa		13.63	□□□□□ -0.23
PDLIM5-223	ENST00000627587	NCOA3	Q9Y6Q9	1424 aa		13.63	□□□□□ -0.23
PDLIM5-223	ENST00000627587	SLAIN2	Q9P270	581 aa		13.63	□□□□□ -0.23
PDLIM5-223	ENST00000627587	TRPM2	O94759	1503 aa		13.62	□□□□□ -0.23
PDLIM5-223	ENST00000627587	PPP4R3CP	Q6ZMV5	832 aa		13.61	□□□□□ -0.23
PDLIM5-223	ENST00000627587	CLTCL1	P53675	1640 aa		13.61	□□□□□ -0.23
PDLIM5-223	ENST00000627587	ZFYVE9	O95405	1425 aa		13.6	□□□□□ -0.23
PDLIM5-223	ENST00000627587	RIMS2	Q9UQ26	1411 aa		13.6	□□□□□ -0.23
PDLIM5-223	ENST00000627587	ROBO1	Q9Y6N7	1651 aa		13.6	□□□□□ -0.23
PDLIM5-223	ENST00000627587	CCDC144A	A2RUR9	1427 aa		13.59	□□□□□ -0.23
PDLIM5-223	ENST00000627587	PIK3R4	Q99570	1358 aa		13.59	□□□□□ -0.23
PDLIM5-223	ENST00000627587	CHD2	O14647	1828 aa	Known RBP	13.59	□□□□□ -0.23
PDLIM5-223	ENST00000627587	NBPF8	Q3BBV2	869 aa		13.59	□□□□□ -0.23
PDLIM5-223	ENST00000627587	RBM33	Q96EV2	1170 aa	Known RBP	13.58	□□□□□ -0.24
PDLIM5-223	ENST00000627587	JCAD	Q9P266	1359 aa		13.58	□□□□□ -0.24
PDLIM5-223	ENST00000627587	HOXD11	P31277	338 aa	Predicted RBP	13.57	□□□□□ -0.24
PDLIM5-223	ENST00000627587	TMEM131L	A2VDJ0	1609 aa		13.57	□□□□□ -0.24
PDLIM5-223	ENST00000627587	CHGA	P10645	457 aa	Known RBP	13.57	□□□□□ -0.24
PDLIM5-223	ENST00000627587	POTEA	Q6S8J7	498 aa		13.57	□□□□□ -0.24
PDLIM5-223	ENST00000627587	CADPS2	Q86UW7	1296 aa		13.56	□□□□□ -0.24
PDLIM5-223	ENST00000627587	SPATA31E1	Q6ZUB1	1445 aa		13.56	□□□□□ -0.24
PDLIM5-223	ENST00000627587	C14orf37	Q86TY3	774 aa		13.55	□□□□□ -0.24
PDLIM5-223	ENST00000627587	C19orf44	Q9H6X5	657 aa		13.55	□□□□□ -0.24
PDLIM5-223	ENST00000627587	DIP2A	Q14689	1571 aa		13.54	□□□□□ -0.24
PDLIM5-223	ENST00000627587	PHLPP1	O60346	1717 aa		13.54	□□□□□ -0.24
PDLIM5-223	ENST00000627587	MYO5B	Q9ULV0	1848 aa		13.54	□□□□□ -0.24
PDLIM5-223	ENST00000627587	DCAF8L1	A6NGE4	600 aa		13.54	□□□□□ -0.24
PDLIM5-223	ENST00000627587	ATF3	P18847	181 aa		13.54	□□□□□ -0.24
PDLIM5-223	ENST00000627587	SPATA31A6	Q5VVP1	1343 aa		13.53	□□□□□ -0.24
PDLIM5-223	ENST00000627587	KIF1B	O60333	1816 aa		13.52	□□□□□ -0.25
PDLIM5-223	ENST00000627587	ADAMTS13	Q76LX8	1427 aa		13.51	□□□□□ -0.25
PDLIM5-223	ENST00000627587	IFT172	Q9UG01	1749 aa		13.51	□□□□□ -0.25
PDLIM5-223	ENST00000627587	TRPM1	Q7Z4N2	1603 aa		13.51	□□□□□ -0.25
PDLIM5-223	ENST00000627587	ZNF772	Q68DY9	489 aa	Predicted RBP	13.5	□□□□□ -0.25
PDLIM5-223	ENST00000627587	AMOTL2	Q9Y2J4	779 aa		13.5	□□□□□ -0.25
PDLIM5-223	ENST00000627587	DIEXF	Q68CQ4	756 aa	Known RBP	13.49	□□□□□ -0.25
PDLIM5-223	ENST00000627587	RALGAPB	Q86X10	1494 aa		13.49	□□□□□ -0.25
PDLIM5-223	ENST00000627587	MEX3C	Q5U5Q3	659 aa	Known RBP	13.48	□□□□□ -0.25
PDLIM5-223	ENST00000627587	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.48	□□□□□ -0.25
PDLIM5-223	ENST00000627587	PRAG1	Q86YV5	1406 aa		13.48	□□□□□ -0.25
PDLIM5-223	ENST00000627587	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.48	□□□□□ -0.25
PDLIM5-223	ENST00000627587	DCAF11	Q8TEB1	546 aa		13.48	□□□□□ -0.25
PDLIM5-223	ENST00000627587	COL16A1	Q07092	1604 aa	Predicted RBP	13.48	□□□□□ -0.25
PDLIM5-223	ENST00000627587	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.47	□□□□□ -0.25
PDLIM5-223	ENST00000627587	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.47	□□□□□ -0.25
PDLIM5-223	ENST00000627587	RGL3	Q3MIN7	710 aa		13.47	□□□□□ -0.25
PDLIM5-223	ENST00000627587	DCC	P43146	1447 aa		13.46	□□□□□ -0.25
PDLIM5-223	ENST00000627587	RNF39	Q9H2S5	420 aa		13.45	□□□□□ -0.26
PDLIM5-223	ENST00000627587	KDM2A	Q9Y2K7	1162 aa		13.45	□□□□□ -0.26
PDLIM5-223	ENST00000627587	ZNF326	Q5BKZ1	582 aa	Known RBP	13.44	□□□□□ -0.26
PDLIM5-223	ENST00000627587	PPL	O60437	1756 aa		13.44	□□□□□ -0.26
PDLIM5-223	ENST00000627587	SHPRH	Q149N8	1683 aa		13.44	□□□□□ -0.26
PDLIM5-223	ENST00000627587	HSPA5	P11021	654 aa	Known RBP	13.44	□□□□□ -0.26
PDLIM5-223	ENST00000627587	BRINP3	Q76B58	766 aa		13.44	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms