RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 ABCC5O15440 1437 aa8.01□□□□□ -1.13
VRK3-226ENST00000602029 DAPK1P53355 1430 aa8.01□□□□□ -1.13
VRK3-226ENST00000602029 PTPN23Q9H3S7 1636 aa8□□□□□ -1.13
VRK3-226ENST00000602029 HDGFP51858 240 aaKnown RBP8□□□□□ -1.13
VRK3-226ENST00000602029 IDI1Q13907 227 aa8□□□□□ -1.13
VRK3-226ENST00000602029 PIK3C2BO00750 1634 aa8□□□□□ -1.13
VRK3-226ENST00000602029 MROH1Q8NDA8 1641 aa8□□□□□ -1.13
VRK3-226ENST00000602029 PRDM15P57071 1507 aaPredicted RBP7.99□□□□□ -1.13
VRK3-226ENST00000602029 KCNA6P17658 529 aa7.99□□□□□ -1.13
VRK3-226ENST00000602029 RXRBP28702 533 aa7.99□□□□□ -1.13
VRK3-226ENST00000602029 NUTM2DQ5VT03 806 aaPredicted RBP7.99□□□□□ -1.13
VRK3-226ENST00000602029 ZNF772Q68DY9 489 aaPredicted RBP7.99□□□□□ -1.13
VRK3-226ENST00000602029 SLIT1O75093 1534 aa7.98□□□□□ -1.13
VRK3-226ENST00000602029 ARHGAP31Q2M1Z3 1444 aa7.98□□□□□ -1.13
VRK3-226ENST00000602029 FGD6Q6ZV73 1430 aa7.98□□□□□ -1.13
VRK3-226ENST00000602029 ITGAEP38570 1179 aa7.98□□□□□ -1.13
VRK3-226ENST00000602029 ARHGAP23Q9P227 1491 aa7.98□□□□□ -1.13
VRK3-226ENST00000602029 DIP2AQ14689 1571 aa7.97□□□□□ -1.13
VRK3-226ENST00000602029 NUTM2BA6NNL0 878 aaPredicted RBP7.97□□□□□ -1.13
VRK3-226ENST00000602029 NUTM2EB1AL46 878 aaPredicted RBP7.97□□□□□ -1.13
VRK3-226ENST00000602029 ATF3P18847 181 aa7.97□□□□□ -1.13
VRK3-226ENST00000602029 NUTM2AQ8IVF1 878 aaPredicted RBP7.97□□□□□ -1.13
VRK3-226ENST00000602029 SLC52A1Q9NWF4 448 aa7.97□□□□□ -1.13
VRK3-226ENST00000602029 SLAIN2Q9P270 581 aa7.97□□□□□ -1.13
VRK3-226ENST00000602029 KDM5AP29375 1690 aaKnown RBP7.97□□□□□ -1.13
VRK3-226ENST00000602029 CROCC2H7BZ55 1655 aa7.96□□□□□ -1.13
VRK3-226ENST00000602029 ADGRB3O60242 1522 aa7.96□□□□□ -1.14
VRK3-226ENST00000602029 LRP5O75197 1615 aa7.96□□□□□ -1.14
VRK3-226ENST00000602029 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.95□□□□□ -1.14
VRK3-226ENST00000602029 NWD1Q149M9 1564 aa7.95□□□□□ -1.14
VRK3-226ENST00000602029 RIMS2Q9UQ26 1411 aa7.95□□□□□ -1.14
VRK3-226ENST00000602029 NKTRP30414 1462 aaKnown RBP7.94□□□□□ -1.14
VRK3-226ENST00000602029 CHD2O14647 1828 aaKnown RBP7.94□□□□□ -1.14
VRK3-226ENST00000602029 AHDC1Q5TGY3 1603 aaPredicted RBP7.94□□□□□ -1.14
VRK3-226ENST00000602029 ZNF326Q5BKZ1 582 aaKnown RBP7.94□□□□□ -1.14
VRK3-226ENST00000602029 ZRANB1Q9UGI0 708 aa7.94□□□□□ -1.14
VRK3-226ENST00000602029 AFF2P51816 1311 aa7.94□□□□□ -1.14
VRK3-226ENST00000602029 SPATA31A6Q5VVP1 1343 aa7.94□□□□□ -1.14
VRK3-226ENST00000602029 ANKRD50Q9ULJ7 1429 aa7.94□□□□□ -1.14
VRK3-226ENST00000602029 TET3O43151 1660 aa7.93□□□□□ -1.14
VRK3-226ENST00000602029 CADPS2Q86UW7 1296 aa7.92□□□□□ -1.14
VRK3-226ENST00000602029 PLEKHG1Q9ULL1 1385 aa7.92□□□□□ -1.14
VRK3-226ENST00000602029 LMTK2Q8IWU2 1503 aa7.92□□□□□ -1.14
VRK3-226ENST00000602029 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.92□□□□□ -1.14
VRK3-226ENST00000602029 PPARGC1BQ86YN6 1023 aaKnown RBP7.91□□□□□ -1.14
VRK3-226ENST00000602029 NOS1P29475 1434 aa7.91□□□□□ -1.14
VRK3-226ENST00000602029 MYO5BQ9ULV0 1848 aa7.91□□□□□ -1.14
VRK3-226ENST00000602029 C19orf44Q9H6X5 657 aa7.9□□□□□ -1.14
VRK3-226ENST00000602029 RPRD2Q5VT52 1461 aaKnown RBP7.89□□□□□ -1.15
VRK3-226ENST00000602029 NUP155O75694 1391 aa7.89□□□□□ -1.15
VRK3-226ENST00000602029 ATAD2Q6PL18 1390 aa7.89□□□□□ -1.15
VRK3-226ENST00000602029 RBM6P78332 1123 aaKnown RBP7.89□□□□□ -1.15
VRK3-226ENST00000602029 AMOTL2Q9Y2J4 779 aa7.89□□□□□ -1.15
VRK3-226ENST00000602029 TBX22Q9Y458 520 aa7.89□□□□□ -1.15
VRK3-226ENST00000602029 BRWD3Q6RI45 1802 aa7.89□□□□□ -1.15
VRK3-226ENST00000602029 GCC2Q8IWJ2 1684 aa7.89□□□□□ -1.15
VRK3-226ENST00000602029 NHSL1Q5SYE7 1610 aa7.89□□□□□ -1.15
VRK3-226ENST00000602029 C8orf37Q96NL8 207 aa7.88□□□□□ -1.15
VRK3-226ENST00000602029 QTRT2Q9H974 415 aaKnown RBP7.88□□□□□ -1.15
VRK3-226ENST00000602029 ADGRL2O95490 1459 aa7.87□□□□□ -1.15
VRK3-226ENST00000602029 ZFYVE9O95405 1425 aa7.87□□□□□ -1.15
VRK3-226ENST00000602029 ADAMTS2O95450 1211 aa7.86□□□□□ -1.15
VRK3-226ENST00000602029 BRINP3Q76B58 766 aa7.86□□□□□ -1.15
VRK3-226ENST00000602029 TRPM2O94759 1503 aa7.86□□□□□ -1.15
VRK3-226ENST00000602029 IFFO2Q5TF58 517 aa7.85□□□□□ -1.15
VRK3-226ENST00000602029 NGLY1Q96IV0 654 aa7.85□□□□□ -1.15
VRK3-226ENST00000602029 TMEM131LA2VDJ0 1609 aa7.85□□□□□ -1.15
VRK3-226ENST00000602029 PIK3R4Q99570 1358 aa7.84□□□□□ -1.15
VRK3-226ENST00000602029 DDX17Q92841 729 aaKnown RBP7.84□□□□□ -1.15
VRK3-226ENST00000602029 LRRC59Q96AG4 307 aaKnown RBP7.84□□□□□ -1.15
VRK3-226ENST00000602029 ADAMTS13Q76LX8 1427 aa7.84□□□□□ -1.15
VRK3-226ENST00000602029 NCOA3Q9Y6Q9 1424 aa7.84□□□□□ -1.15
VRK3-226ENST00000602029 BCL9LQ86UU0 1499 aa7.83□□□□□ -1.16
VRK3-226ENST00000602029 DEFB132Q7Z7B7 95 aa7.83□□□□□ -1.16
VRK3-226ENST00000602029 UNC13BO14795 1591 aa7.83□□□□□ -1.16
VRK3-226ENST00000602029 ASXL1Q8IXJ9 1541 aa7.83□□□□□ -1.16
VRK3-226ENST00000602029 PSDA5PKW4 1024 aaPredicted RBP7.82□□□□□ -1.16
VRK3-226ENST00000602029 PLEKHG5O94827 1062 aa7.82□□□□□ -1.16
VRK3-226ENST00000602029 SETD5Q9C0A6 1442 aa7.82□□□□□ -1.16
VRK3-226ENST00000602029 E9PCH4 1651 aa7.82□□□□□ -1.16
VRK3-226ENST00000602029 ROCK1Q13464 1354 aa7.82□□□□□ -1.16
VRK3-226ENST00000602029 PNPLA6Q8IY17 1366 aa7.82□□□□□ -1.16
VRK3-226ENST00000602029 MARF1Q9Y4F3 1742 aaKnown RBP7.81□□□□□ -1.16
VRK3-226ENST00000602029 ATRNO75882 1429 aa7.81□□□□□ -1.16
VRK3-226ENST00000602029 PTPRUQ92729 1446 aa7.81□□□□□ -1.16
VRK3-226ENST00000602029 DCCP43146 1447 aa7.8□□□□□ -1.16
VRK3-226ENST00000602029 HAP1P54257 671 aaPredicted RBP7.8□□□□□ -1.16
VRK3-226ENST00000602029 USP21Q9UK80 565 aa7.8□□□□□ -1.16
VRK3-226ENST00000602029 IQGAP3Q86VI3 1631 aa7.8□□□□□ -1.16
VRK3-226ENST00000602029 METP08581 1390 aa7.8□□□□□ -1.16
VRK3-226ENST00000602029 MST1RQ04912 1400 aa7.79□□□□□ -1.16
VRK3-226ENST00000602029 HRCP23327 699 aa7.79□□□□□ -1.16
VRK3-226ENST00000602029 YY1P25490 414 aa7.79□□□□□ -1.16
VRK3-226ENST00000602029 ESCO1Q5FWF5 840 aa7.79□□□□□ -1.16
VRK3-226ENST00000602029 ADGRL3Q9HAR2 1447 aa7.78□□□□□ -1.16
VRK3-226ENST00000602029 NUTM2FA1L443 756 aa7.78□□□□□ -1.16
VRK3-226ENST00000602029 VGFO15240 615 aaPredicted RBP7.78□□□□□ -1.16
VRK3-226ENST00000602029 XPCQ01831 940 aaPredicted RBP7.78□□□□□ -1.16
VRK3-226ENST00000602029 STK26Q9P289 416 aa7.78□□□□□ -1.16
VRK3-226ENST00000602029 GLI3P10071 1580 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms